Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30184
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   127   9e-32
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   122   5e-30
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    69   5e-14
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    37   2e-04
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.0  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  127 bits (307), Expect = 9e-32
 Identities = 79/152 (51%), Positives = 94/152 (61%), Gaps = 5/152 (3%)
 Frame = -3

Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
           +NVS +ELRRGYVAGDSKNNPP G   F +       ++V N    +   +T +   H  
Sbjct: 313 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQ------VIVLNHPGQISNGYTPVLDCHTA 366

Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
           H   +    +EK DRR GK+TE          +       IV LVPSKP+C E+FQEFPP
Sbjct: 367 HIACKFADIKEKCDRRNGKTTEENP------KSIKSGDAAIVMLVPSKPMCAEAFQEFPP 420

Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
           LGRFAVRDMRQTVAVGVIKAV FK+A  GKVT
Sbjct: 421 LGRFAVRDMRQTVAVGVIKAVTFKDA-AGKVT 451


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  122 bits (293), Expect = 5e-30
 Identities = 75/152 (49%), Positives = 93/152 (61%), Gaps = 5/152 (3%)
 Frame = -3

Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
           +N+S +ELRRGYVAGDSKN PP G   F +       ++V N    +   +T +   H  
Sbjct: 313 KNISVKELRRGYVAGDSKNQPPRGAADFTAQ------VIVLNHPGQISNGYTPVLDCHTA 366

Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
           H   +    +EK DRRTGK+TE          +       IV L P+KP+CVE+FQEFPP
Sbjct: 367 HIACKFAEIKEKCDRRTGKTTEENP------KSIKSGDAAIVMLQPTKPMCVEAFQEFPP 420

Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
           LGRFAVRDMRQTVAVGVIK+V FK+   GKVT
Sbjct: 421 LGRFAVRDMRQTVAVGVIKSVTFKDT-QGKVT 451


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 68.9 bits (161), Expect = 5e-14
 Identities = 39/63 (61%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = -1

Query: 636 KGAADFTAQVIGA*PSWFKISNGYTPVLDCHTAHIACKFAEI-XXXXXXXXXXXXKSPKS 460
           +GAADFTAQVI       +ISNGYTPVLDCHTAHIACKFAEI             ++PKS
Sbjct: 46  RGAADFTAQVIVLNHPG-QISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKS 104

Query: 459 IKS 451
           IKS
Sbjct: 105 IKS 107



 Score = 53.6 bits (123), Expect = 2e-09
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = -3

Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
           +N+S +ELRRGYVAGDSKN PP G   F +       ++V N    +   +T +   H  
Sbjct: 24  KNISVKELRRGYVAGDSKNQPPRGAADFTAQ------VIVLNHPGQISNGYTPVLDCHTA 77

Query: 535 H-CLQICRNQEKVDRRTGKSTE 473
           H   +    +EK DRRTGK+TE
Sbjct: 78  HIACKFAEIKEKCDRRTGKTTE 99


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = -3

Query: 703 RNVSRQELRRGYVAGDSKN 647
           +NVS +ELRRGYVAGDSKN
Sbjct: 256 KNVSVKELRRGYVAGDSKN 274


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 184 KYRSCMKNCAVNSSSYFLPLVAFS 255
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 184 KYRSCMKNCAVNSSSYFLPLVAFS 255
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 184 KYRSCMKNCAVNSSSYFLPLVAFS 255
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 145 CSPFFLRNTFR*MKYRSCMKN 207
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 571 RLHTSIGLPHCPHC 530
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -2

Query: 695 VPSGIASWLCCW*LQKQPTLRVLQILQLKSLGLNHPGSKSQTVTHQY 555
           VPS    W+  W  QK   ++ +Q+++  +    H   + + +  Q+
Sbjct: 598 VPSLDQVWILNWRNQKDIDVKTVQVIEDAAQKKKHRAIRPEPIDAQF 644


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 471 SPKSIKSEGKILGXPRAPLSTWY 403
           SP+ +K++ +I   PR P+   Y
Sbjct: 15  SPQILKNDKRIYLSPRTPIKNVY 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,090
Number of Sequences: 438
Number of extensions: 4344
Number of successful extensions: 25
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)