Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30183
(488 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 116 3e-25
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 109 2e-23
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 104 1e-21
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 102 4e-21
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 101 1e-20
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 71 2e-11
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 59 6e-08
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 58 1e-07
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 57 2e-07
UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 51 2e-05
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 46 3e-04
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 43 0.003
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 39 0.069
UniRef50_Q232P0 Cluster: MHCK/EF2 kinase domain family protein; ... 34 1.5
UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t... 33 3.4
UniRef50_A0RUE5 Cluster: Ribosomal protein L15; n=1; Cenarchaeum... 33 3.4
UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella ve... 32 7.9
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 116 bits (279), Expect = 3e-25
Identities = 49/85 (57%), Positives = 61/85 (71%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 182 FHFRKNKNFCPVLNLDKLWTLVSER 256
+H ++N++FCP +NLDKLWTLVSE+
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQ 85
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 109 bits (263), Expect = 2e-23
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
MAT+ KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 182 FHFRKNKNFCPVLNLDKLWTLVSE 253
FH +NK FCP++NLDKLW+LV E
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPE 84
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 104 bits (249), Expect = 1e-21
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +2
Query: 101 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSER 256
NAGG+HHHRIN DKYHPGYFGK+GMRNFH RKN +CP +NLDKLW+LVSE+
Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNLDKLWSLVSEK 71
Score = 33.9 bits (74), Expect = 2.0
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +1
Query: 256 TRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 372
TR YA D K PVI++VKA PKQPVIV
Sbjct: 72 TRTTYAEKKD-KAPVIDVVKAGYFKVLGKGLLPKQPVIV 109
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 102 bits (245), Expect = 4e-21
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 187
T K RK RGHVS AGG+HHHRI MDKYHPGYFGK+GMR+FH
Sbjct: 54 TQLHKNRKKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFH 113
Query: 188 FRKNKNFCPVLNLDKLWTLV-SERR 259
KN+ CP +N+DKLWTLV +E+R
Sbjct: 114 KLKNQTVCPTINIDKLWTLVGTEKR 138
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 101 bits (241), Expect = 1e-20
Identities = 47/86 (54%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXN--AGGEHHHRINMDKYHPGYFGKLGM 175
M + KKTRKLRGHVS AGG HHHRI M+K+HPGY+GKLGM
Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60
Query: 176 RNFHFRKNKNFCPVLNLDKLWTLVSE 253
R FH +KN CPV+N+DKLW+LVS+
Sbjct: 61 RTFHLKKNPLHCPVVNIDKLWSLVSD 86
>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
theta (Cryptomonas phi)
Length = 144
Score = 70.5 bits (165), Expect = 2e-11
Identities = 40/104 (38%), Positives = 54/104 (51%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
M T +++RK RGHVS N+GG+HHH+I +KYH +FGK GMR
Sbjct: 1 MPTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRY 60
Query: 182 FHFRKNKNFCPVLNLDKLWTLVSERRG*SMHLLQMARSPSSILS 313
+ K NF +NLDK +S++ +MHL S S LS
Sbjct: 61 YRKLKQNNFNKSINLDK----ISDKLVKNMHLHTKNSSDSFDLS 100
>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
- Encephalitozoon cuniculi
Length = 147
Score = 58.8 bits (136), Expect = 6e-08
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
M KKTRKLRGHVS AGG H + ++HP Y GK GMR
Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60
Query: 182 FHFRKNKNFCPVLNLDKLWTLVSERR 259
+H ++N ++ ++ +LW ++ + +
Sbjct: 61 YHRKENSDYARPISSARLWGMIPKEQ 86
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 58.0 bits (134), Expect = 1e-07
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +2
Query: 137 DKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSERRG 262
DK+HPG FGK+GMR+FH + K CP++++DKLW++V G
Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWSMVPPAAG 69
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 57.2 bits (132), Expect = 2e-07
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +2
Query: 110 GEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV--SERRG 262
G ++ + YFGK+GMR+FH +N +F PV+NLDKLWTLV +R+G
Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNLDKLWTLVPAEQRKG 129
Score = 52.4 bits (120), Expect = 5e-06
Identities = 25/50 (50%), Positives = 26/50 (52%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHP 151
M T KTRK RGHVS AGG+HHHR NMDKYHP
Sbjct: 1 MPTHLSKTRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50
>UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella
natans|Rep: Ribosomal protein L27a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 151
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
M T KK+RK+RG S +GG+HHH+I ++Y YF K GMR
Sbjct: 1 MVTKLKKSRKMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRI 60
Query: 182 FHFRKNKN 205
++ K N
Sbjct: 61 YNLEKTLN 68
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 46.4 bits (105), Expect = 3e-04
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 175
M TS+KKTR LR HVS H R + PG G +GM
Sbjct: 1 MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39
Query: 176 RNFHFRKNKNFCPVLNLDKLWTLV 247
R FH +NK +C ++NLDKLW++V
Sbjct: 40 RYFHKLRNKFYCQIVNLDKLWSMV 63
>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
n=2; Saccharomycetaceae|Rep: Putative uncharacterized
protein YGL102C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 142
Score = 43.2 bits (97), Expect = 0.003
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -2
Query: 253 FRD*CPKLI*VQNWTEILVLSKVEISHTKFAKVSRMVLVHVDXXXXXXXXXXXXXXXXXV 74
F D CP+ + VQ+W + L VE+SHT +++ MV +HV+ V
Sbjct: 69 FWDQCPQFVQVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGHTSTTGVLSV 128
Query: 73 LSDTTMS 53
L+DTT +
Sbjct: 129 LTDTTFT 135
>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L27a - Rattus
norvegicus
Length = 86
Score = 38.7 bits (86), Expect = 0.069
Identities = 21/51 (41%), Positives = 24/51 (47%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 154
M+ +KTRK +GHVS NAGGEH HRIN PG
Sbjct: 1 MSGRLRKTRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51
>UniRef50_Q232P0 Cluster: MHCK/EF2 kinase domain family protein;
n=1; Tetrahymena thermophila SB210|Rep: MHCK/EF2 kinase
domain family protein - Tetrahymena thermophila SB210
Length = 842
Score = 34.3 bits (75), Expect = 1.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 292 PCHLEQMHTSASSFRD*CPKLI*VQNWTEILVLSKVEIS 176
PCH ++ HT+A + + CPK + ++ E L +E+S
Sbjct: 184 PCHGKKYHTTADDYPEGCPKGVNIEGLIETLAKRNIELS 222
>UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse
transcriptase; n=1; Arabidopsis thaliana|Rep: Putative
non-LTR retroelement reverse transcriptase - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1044
Score = 33.1 bits (72), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 136 GQVPSWILWQTWYEKFPL*KEQEFLSSFEL 225
GQ+P WILW W + L EQ+ +SS +L
Sbjct: 842 GQLPIWILWNLWNCRNKLIFEQKHISSMDL 871
>UniRef50_A0RUE5 Cluster: Ribosomal protein L15; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L15 - Cenarchaeum
symbiosum
Length = 138
Score = 33.1 bits (72), Expect = 3.4
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 MATSKKKTRKLRG-HVSXXXXXXXXXXXXXXXXXNAGGE-HHHRINMDKYHPGYFGKLGM 175
MAT +KTRKLRG G+ HH +M K PG+FG
Sbjct: 1 MATRNRKTRKLRGSRTHGWGQVGQHRASGHKGGVGVSGQLKHHFSSMLKEDPGHFGHDST 60
Query: 176 RNFHFRKNKNFCPVLNLDKLWTLVSERRG 262
H K + V +LD T G
Sbjct: 61 HPPHSNAAKKWASVRDLDDFHTRFGTEEG 89
>UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 306
Score = 31.9 bits (69), Expect = 7.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 209 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 72
R+SC + F +C+S T PC D H +H DL+D GA
Sbjct: 108 RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 151
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,645,607
Number of Sequences: 1657284
Number of extensions: 8197243
Number of successful extensions: 18890
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18875
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -