Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30183
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    91   1e-19
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    89   3e-19
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces...    27   1.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   4.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   4.6  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   6.1  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.1  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 43/82 (52%), Positives = 48/82 (58%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLV 247
           FH  KN  + P +NLD+LWTLV
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLV 82


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 89.0 bits (211), Expect = 3e-19
 Identities = 42/82 (51%), Positives = 48/82 (58%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLV 247
           FH  KN  + P +NLD+LWTL+
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLL 82


>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 323 YPALTILMTGTLPSGADAYFSLVVQRLMSKAYLSSKLDRNSCSF 192
           +P +TI MTG   SG       + Q L+ +   + +LD ++  F
Sbjct: 23  HPGMTIWMTGLSASGKSTIACALEQYLLQRGVTTYRLDGDNVRF 66


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 320 PALTILMTGTLPSGADAYFSLVVQRLMS 237
           P +++LM+G  PS  + Y ++V+  LMS
Sbjct: 786 PDISLLMSGIGPSSDEYYPTVVITALMS 813


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 324  VSSFDNIDDGDLAIWS----RCILQPRRSETNVQSLSKFKTG 211
            V  +  IDDGDL ++     R ++    +E ++Q LS   +G
Sbjct: 910  VEKYSYIDDGDLVVYEIAKRRKVVSKENAECDIQVLSASPSG 951


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 342 RQTPQTTCHSKSKVLLKISREENSREFWGFFYGGG 446
           +++  T  HSK+  +L +SR+      +G  YG G
Sbjct: 714 KKSEGTDLHSKTAAILGVSRDSAKVFNYGRLYGAG 748


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 341 LPSNL*YPALTILMTGTLPSGADA--YFSLVVQRLMSKAYLSSKLDR 207
           LPS   +PALT+  TG + S  D   + S V+  L  +   ++ + R
Sbjct: 379 LPSYNVFPALTVFFTGIMMSAHDQTNHVSTVIHVLWGRLLAAAAIAR 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,495
Number of Sequences: 5004
Number of extensions: 34668
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)