Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30183
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0563 + 4134954-4135388                                           96   2e-20
07_03_1250 - 25183375-25183815                                         95   2e-20
03_04_0027 + 16593133-16593573                                         95   4e-20
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021...    27   6.1  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     27   6.1  
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    27   8.1  

>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 43/87 (49%), Positives = 51/87 (58%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLVSERRG 262
           FH   N+  CP +N+++LW++V    G
Sbjct: 61  FHRLSNRFHCPAVNVERLWSMVPAEAG 87


>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 42/82 (51%), Positives = 52/82 (63%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M TS +K RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLV 247
           FH  +NK + P +N+++LW++V
Sbjct: 61  FHRLRNKFYSPAVNVERLWSMV 82


>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 42/82 (51%), Positives = 50/82 (60%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLV 247
           FH   N+  CP +N+++LW++V
Sbjct: 61  FHKLSNRFHCPAVNVERLWSMV 82


>09_04_0302 +
           16501020-16501049,16501568-16501659,16502063-16502198,
           16502297-16502727,16502950-16503028
          Length = 255

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 128 FCDGAHHQHYHDLLDAYG 75
           +C+G HH H H   D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 111 PPALPRPPGCLRCFPIRPCP 52
           PPA P PP  L C P+ P P
Sbjct: 10  PPAPPSPPPALPCDPMPPPP 29


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 114 SPP-ALPRPPGCLRCFPIRPCP 52
           SPP  LP PPG   C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,073
Number of Sequences: 37544
Number of extensions: 242567
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)