Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30183
         (488 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   116   4e-26
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   116   4e-26
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   116   4e-26
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   116   4e-26
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   115   8e-26
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   113   3e-25
BC064847-1|AAH64847.1|  770|Homo sapiens RNF17 protein protein.        30   4.9  
AL391560-3|CAI15248.2| 1623|Homo sapiens ring finger protein 17 ...    30   4.9  
AL354798-2|CAM23326.1| 1623|Homo sapiens ring finger protein 17 ...    30   4.9  
AL354798-1|CAI16633.1|  633|Homo sapiens ring finger protein 17 ...    30   4.9  
AK001907-1|BAA91972.1|  633|Homo sapiens protein ( Homo sapiens ...    30   4.9  
AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.             29   6.5  

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  116 bits (279), Expect = 4e-26
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLVSER 256
           +H ++N++FCP +NLDKLWTLVSE+
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQ 85



 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 256 TRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 372
           TR+  A    G  P+I++V++           PKQPVIV
Sbjct: 86  TRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 124


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  116 bits (279), Expect = 4e-26
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLVSER 256
           +H ++N++FCP +NLDKLWTLVSE+
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQ 85



 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 256 TRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 372
           TR+  A    G  P+I++V++           PKQPVIV
Sbjct: 86  TRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 124


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  116 bits (279), Expect = 4e-26
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLVSER 256
           +H ++N++FCP +NLDKLWTLVSE+
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQ 85


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  116 bits (279), Expect = 4e-26
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLVSER 256
           +H ++N++FCP +NLDKLWTLVSE+
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQ 85



 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 256 TRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 372
           TR+  A    G  P+I++V++           PKQPVIV
Sbjct: 86  TRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 124


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  115 bits (277), Expect = 8e-26
 Identities = 48/80 (60%), Positives = 59/80 (73%)
 Frame = +2

Query: 17  KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 196
           +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64

Query: 197 NKNFCPVLNLDKLWTLVSER 256
           N++FCP +NLDKLWTLVSE+
Sbjct: 65  NQSFCPTVNLDKLWTLVSEQ 84



 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 256 TRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 372
           TR+  A    G  P+I++V++           PKQPVIV
Sbjct: 85  TRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 123


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  113 bits (272), Expect = 3e-25
 Identities = 48/85 (56%), Positives = 61/85 (71%)
 Frame = +2

Query: 2   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 182 FHFRKNKNFCPVLNLDKLWTLVSER 256
           ++ ++N++FCP +NLDKLWTLVSE+
Sbjct: 61  YNLKRNQSFCPTVNLDKLWTLVSEQ 85


>BC064847-1|AAH64847.1|  770|Homo sapiens RNF17 protein protein.
          Length = 770

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 206 FCPVLNLDKLWTLVSERRG*SMHLLQMARSPSSILSKLD 322
           +CP  +++ LW ++   +G  ++ + MA +P  I++  D
Sbjct: 712 YCPKWSMEALWAMIDCLQGKQLYAVSMAPAPEQIVTLYD 750


>AL391560-3|CAI15248.2| 1623|Homo sapiens ring finger protein 17
            protein.
          Length = 1623

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 206  FCPVLNLDKLWTLVSERRG*SMHLLQMARSPSSILSKLD 322
            +CP  +++ LW ++   +G  ++ + MA +P  I++  D
Sbjct: 1565 YCPKWSMEALWAMIDCLQGKQLYAVSMAPAPEQIVTLYD 1603


>AL354798-2|CAM23326.1| 1623|Homo sapiens ring finger protein 17
            protein.
          Length = 1623

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 206  FCPVLNLDKLWTLVSERRG*SMHLLQMARSPSSILSKLD 322
            +CP  +++ LW ++   +G  ++ + MA +P  I++  D
Sbjct: 1565 YCPKWSMEALWAMIDCLQGKQLYAVSMAPAPEQIVTLYD 1603


>AL354798-1|CAI16633.1|  633|Homo sapiens ring finger protein 17
           protein.
          Length = 633

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 206 FCPVLNLDKLWTLVSERRG*SMHLLQMARSPSSILSKLD 322
           +CP  +++ LW ++   +G  ++ + MA +P  I++  D
Sbjct: 575 YCPKWSMEALWAMIDCLQGKQLYAVSMAPAPEQIVTLYD 613


>AK001907-1|BAA91972.1|  633|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11045 fis, clone PLACE1004460. ).
          Length = 633

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 206 FCPVLNLDKLWTLVSERRG*SMHLLQMARSPSSILSKLD 322
           +CP  +++ LW ++   +G  ++ + MA +P  I++  D
Sbjct: 575 YCPKWSMEALWAMIDCLQGKQLYAVSMAPAPEQIVTLYD 613


>AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.
          Length = 126

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 171 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLVF 19
           P+LPK+PG  ++ L   W S    P P G +    + PCP       PL FLV+
Sbjct: 55  PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLVW 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,025,812
Number of Sequences: 237096
Number of extensions: 1335218
Number of successful extensions: 2622
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2615
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)