Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30183
(488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 110 6e-25
AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical ... 40 7e-04
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical pr... 28 3.2
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 5.5
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 27 7.3
U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine rece... 27 7.3
U28735-3|AAF99958.3| 467|Caenorhabditis elegans Glycosylation r... 27 9.7
U28735-2|AAM69111.1| 543|Caenorhabditis elegans Glycosylation r... 27 9.7
AF082011-1|AAD03023.1| 467|Caenorhabditis elegans UDP-N-acetylg... 27 9.7
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 110 bits (264), Expect = 6e-25
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = +2
Query: 2 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 181
MA + +KTRKLRGHVS NAGG+HHHRIN DKYHPGYFGK+GMR
Sbjct: 1 MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60
Query: 182 FHFRKNKNFCPVLNLDKLWTLVSE 253
FH KN+++CP +N+++LW+LV +
Sbjct: 61 FHLNKNQHYCPTVNVERLWSLVPQ 84
>AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical
protein Y37E3.8b protein.
Length = 88
Score = 40.3 bits (90), Expect = 7e-04
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +2
Query: 173 MRNFHFRKNKNFCPVLNLDKLWTLVSE 253
MR FH KN+++CP +N+++LW+LV +
Sbjct: 1 MRVFHLNKNQHYCPTVNVERLWSLVPQ 27
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 108 PALPRPPGCLRCFPIRPCP 52
PA P+ P C C P +PCP
Sbjct: 50 PACPQAPSCPVCPPPQPCP 68
>Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical
protein T22C1.9 protein.
Length = 195
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Frame = +2
Query: 5 ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD-----KYHPGYFGKL 169
+T KK+ K GH N GG H + M+ ++ P F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186
Query: 170 GMRNFHFRK 196
G F+F+K
Sbjct: 187 GKSFFNFKK 195
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 173 MRNFHFRKNKNFCPVLNLDKLWTLVSERRG*SMH 274
+R+FH N N+C ++ + S RRG ++H
Sbjct: 140 LRDFHADVNFNYCIIMRTQQNSPFFSNRRGNALH 173
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = +2
Query: 107 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 238
G E HH D YHP F +L + N + F KNK +C D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334
>U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine
receptor, class x protein47 protein.
Length = 301
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 223 VQNWTEILVLSKVEISHTKFAKVSR 149
+ NWT L LSKV H F ++R
Sbjct: 20 IANWTVFLFLSKVPSIHKSFGSLTR 44
>U28735-3|AAF99958.3| 467|Caenorhabditis elegans Glycosylation
related protein 12,isoform a protein.
Length = 467
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -1
Query: 104 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 6
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
>U28735-2|AAM69111.1| 543|Caenorhabditis elegans Glycosylation
related protein 12,isoform b protein.
Length = 543
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -1
Query: 104 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 6
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
>AF082011-1|AAD03023.1| 467|Caenorhabditis elegans
UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
2-N-acetylglucosaminyltransferase I protein.
Length = 467
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -1
Query: 104 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 6
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,507,577
Number of Sequences: 27780
Number of extensions: 203113
Number of successful extensions: 505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -