Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30183
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   5.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.0  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 263 SLVVQRLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC*FCD 120
           S+VV      +YL  KL+RN        +        Q  +C C  CD
Sbjct: 287 SVVVSDYSDYSYLDEKLERNDLDL--EKYEGISSTPSQASSCSCLDCD 332


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 252 NDEAEVCICSRWQGPRHQYCQSWIL*VARQRQTPQT 359
           +DEAE    S+  G    + QS I  VAR+ +T  T
Sbjct: 272 SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGT 307


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 297 RHQYCQSWIL*VARQRQTPQTTCHSKS 377
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,511
Number of Sequences: 438
Number of extensions: 2678
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)