Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30182
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536...    27   5.9  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    27   7.8  

>11_06_0762 +
           27043460-27044319,27052096-27052912,27052992-27053649,
           27053698-27053934,27054091-27054161,27054346-27054441
          Length = 912

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 48  LRHSARPDPRRDTLTMRREGQ 110
           LRH  +  PRR T+T+ R+G+
Sbjct: 834 LRHLTKKHPRRPTITLIRDGE 854


>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
            39490623-39491432,39491738-39493035
          Length = 1205

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 298  EATNRRGESTG*ESTPILPPNGQEN 224
            E++NRRGE  G E+    P + QEN
Sbjct: 956  ESSNRRGEIPGEETNTKRPKHSQEN 980


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,943,763
Number of Sequences: 37544
Number of extensions: 93017
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)