Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30182
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17)               30   0.66 
SB_57137| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17)
          Length = 849

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 95  HCKCIPPRVWPSRVPQRQLIPRM 27
           H +CIP   WPSRVP + L+ R+
Sbjct: 675 HTECIP--FWPSRVPPKDLVVRL 695


>SB_57137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 89  KCIPPRVWPSRVPQRQLIPRM 27
           K  PP  WPSRVP   L+ R+
Sbjct: 345 KLHPPLPWPSRVPGGSLVVRV 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,556,876
Number of Sequences: 59808
Number of extensions: 101506
Number of successful extensions: 207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)