Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30180
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    64   1e-11
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    48   8e-07
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    31   0.17 
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   2.1  
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz...    26   3.6  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   8.4  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 22/44 (50%), Positives = 36/44 (81%)
 Frame = +3

Query: 258 SLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKV 389
           S+ ++G +P+++P+YG GELPQ F RL A++GG Y LN+P+D++
Sbjct: 214 SIAKFGKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEI 257


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +3

Query: 258 SLGRYGNTPFLWPMYGSG-ELPQCFCRLCAVFGGVYCLNRPIDKVETKTV 404
           S G YG+  +L  MYG+G EL Q FCR  AV GG + L + IDK++   +
Sbjct: 239 SFGMYGDYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAIDKIDESKI 288


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 43   RMLMKMLTSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLT--PNL-IHYILY 189
            RML+++  ++  Y E     +F D   KTL   L H G +  PNL + ++ Y
Sbjct: 1231 RMLLEVAKNVNTYCESRQQKDFIDLMGKTLSSVLFHAGKSSDPNLTVDFLAY 1282


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +1

Query: 304 EAENCRNASAGSVQFSAASTA*IGPSIKSKRKPLMKEKPSVFQNPPQNFS*KSKKLNCDH 483
           EA+  RN S+ S+   AAS   +  S++S R      +PS+ +  PQ    KS  +  +H
Sbjct: 194 EAQLPRNKSSVSIAEQAASRPKVSFSLQSSR------QPSIAEEQPQT-QRKSSAITVEH 246

Query: 484 LVIGVHEFPRELMS 525
                 E PR  +S
Sbjct: 247 AENAEPETPRNNVS 260


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 252 PMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKV 389
           P +  + G  P    +Y +GELP  +  L AV  G  CL + I  V
Sbjct: 181 PRTPPKLGYLPVPSFIYSTGELPLSYPTLLAVLCGPICLAKQIINV 226


>SPCC1393.11 |||mitochondrial ribosomal protein subunit
           L20|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 111 RLEQQDIEGILDSQGLDPEPHSLHTVRYRWREQQLALPRRCQGMQE 248
           +L  +DI+ I D +  DP   +  T+  ++   +L + R C+  +E
Sbjct: 110 QLSSEDIKSIQDLRTKDPNAWTTGTLSKKFNTTRLLISRVCEAPKE 155


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 218 PASKVSRNARSSYEPRK 268
           PAS+VSRN  ++ +PRK
Sbjct: 344 PASRVSRNPYTAAQPRK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,714
Number of Sequences: 5004
Number of extensions: 52610
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)