Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30180
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 62 3e-10
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 60 1e-09
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 60 1e-09
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 56 2e-08
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 52 3e-07
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 30 1.2
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 30 1.6
01_03_0233 + 14042548-14044950 30 1.6
04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047 29 2.8
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 29 3.7
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 28 4.9
02_04_0641 - 24667637-24667753,24670088-24670324 28 4.9
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 28 6.5
10_08_0255 - 16243951-16244098,16244612-16244817,16245588-162465... 27 8.6
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 SLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVETKTVDEG 413
S+GR+ G +P+++P+YG GELPQ F RL AV+GG Y LN+P K+E DEG
Sbjct: 209 SVGRFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKIEFN--DEG 259
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 SLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVE 392
SL R+ G +P+++P+YG GELPQ F RL AV+GG Y LN+P KVE
Sbjct: 214 SLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPDCKVE 259
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 SLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVE 392
SL R+ G +P+++P+YG GELPQ F RL AV+GG Y LN+P KVE
Sbjct: 214 SLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPDCKVE 259
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 SLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVE 392
SL R+ G +P+++P+YG ELPQ F RL AV+GG Y LN+ KVE
Sbjct: 214 SLARFQGGSPYIYPLYGLAELPQAFARLSAVYGGTYMLNKAECKVE 259
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +3
Query: 258 SLGRYGNTP--FLWPMYGSGELPQCFCRLCAVFGGVYCLNRP 377
S+GR+ N F++PMYG GELPQ FCR AV G +Y L P
Sbjct: 280 SIGRFANAEGAFIYPMYGHGELPQAFCRCAAVKGALYVLRMP 321
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 136 EYLTHKGLTPNLIHYILYAIAGGNNSLPCLEGVKECKKFL*ASEDMATL 282
E+L + L+P + +LYAIA + +GV+ C++ L E + T+
Sbjct: 229 EFLKRQNLSPKMRAVVLYAIAMADYD---QDGVESCERLLTTREGVKTI 274
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 88 EEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAIAG 201
EE NE KDWN +K++ K L P L+ +++ ++ G
Sbjct: 659 EENQNEQKDWNKGGIKKHFISK-LPPVLVIHLMRSLLG 695
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 372 DSGSRRRRKLHRACR 328
D+GSRRRR+ HR CR
Sbjct: 424 DAGSRRRRRYHRICR 438
>01_03_0233 + 14042548-14044950
Length = 800
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 40 KRMLMKMLTSIVGYSEEEMNNEFKDW 117
+RML+ ++ ++ ++E E++ EF DW
Sbjct: 185 RRMLLSLVPAVRAHAEREISREFSDW 210
>04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047
Length = 377
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = -1
Query: 279 CCHIFRGS*ELLAFLDTFEAGQAVVPASDSVQYVVNEVRGQALVSQVFLQCLVVPVFKLI 100
C + + S L+++ DT + ++ Q+ + V Q L ++ +QCLV+ F L
Sbjct: 18 CVRVGKTSWSLMSYNDTGRRTKRRWKEEEAAQWAIARV--QQLWNEWEIQCLVIVSFLLQ 75
Query: 99 VHLLFAITDNRCQH 58
LLFA T R +H
Sbjct: 76 AFLLFA-TGFRKRH 88
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 520 SAPSGTRGRR*PGDRS*ASSTSTKNFGGGFGKRT 419
S P G R+ R +SS ST + GGG G+RT
Sbjct: 96 SVPCGASPRKIAALRKSSSSLSTTSSGGGSGRRT 129
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 457 STKNFGGGFGKRTVFPSSTVFVSTLSMGRFRQ*TPPKTAQSLQK-HCGNSPLPYMGHKNG 281
+ K GGG+ +R V F T R+ PP TA + H G SP +K+
Sbjct: 52 TAKEAGGGYQERRVVVGEMDFFKTAEKRGERKEPPPATATAAASGHAGASPDDLSLNKDD 111
Query: 280 VLPYLPRLIG 251
+ + L+G
Sbjct: 112 LTINMGLLVG 121
>02_04_0641 - 24667637-24667753,24670088-24670324
Length = 117
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 311 SASIHGPQEWSVAISSEAHRNFLHSLTPSRQGKLLF 204
SA I G + + SE F HS+ SRQG +L+
Sbjct: 77 SAKISGDIYADLGVDSEFEIGFCHSMANSRQGLILY 112
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 365 AVDAAENCTEPAEALRQFSASIHGPQEWSV 276
A +A + P+ AL Q+ A HG WSV
Sbjct: 577 AAEAVTTASLPSRALAQYDAQDHGHGPWSV 606
>10_08_0255 -
16243951-16244098,16244612-16244817,16245588-16246500,
16246577-16246713
Length = 467
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -2
Query: 557 EMFAASQPGSEDISSLGNSW-TPMTR*SQ--LSFFDFYEKFWGGF-WKTDGFSFINGFRF 390
EM+A S I+S GN + P ++ D E W G+ W+T+G +NG F
Sbjct: 321 EMYAIGGSASPTINSQGNRYIAPADPNAKEVTKRVDTEEGQWAGWNWRTEGDMMVNGAFF 380
Query: 389 DFIDGPIQAVDAAENCTEP 333
++A+ + T+P
Sbjct: 381 VPSGEGLEAIYDKASSTDP 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,820,391
Number of Sequences: 37544
Number of extensions: 394341
Number of successful extensions: 1332
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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