Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30180
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 86 2e-17
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 66 3e-11
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14) 64 8e-11
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.2
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38) 27 8.7
SB_31806| Best HMM Match : rve (HMM E-Value=1.9e-07) 27 8.7
SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_7924| Best HMM Match : CheC (HMM E-Value=8.9) 27 8.7
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 86.2 bits (204), Expect = 2e-17
Identities = 33/54 (61%), Positives = 44/54 (81%)
Frame = +3
Query: 243 QEVPMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVETKTV 404
Q MSLGRYGN+PF+WP+YG GELPQ +CR+CAVFGG+YCL++ I + + + V
Sbjct: 456 QSFLMSLGRYGNSPFIWPLYGLGELPQAYCRMCAVFGGLYCLHKSIKQAKEENV 509
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/83 (32%), Positives = 51/83 (61%)
Frame = +1
Query: 7 VFATEAVGIVEKRMLMKMLTSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYIL 186
VF+++ + ++EKR+LMK LT + ++E E+K + +K E+L + +TPNL H+++
Sbjct: 379 VFSSKLIPVIEKRLLMKFLTFCLDHNEHL--EEYKPFEDKPFVEFLKSRRMTPNLQHFVI 436
Query: 187 YAIAGGNNSLPCLEGVKECKKFL 255
+AIA ++G+ + FL
Sbjct: 437 HAIAMVKPDALTIDGLNAAQSFL 459
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 65.7 bits (153), Expect = 3e-11
Identities = 26/44 (59%), Positives = 36/44 (81%)
Frame = +3
Query: 258 SLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKV 389
SL +YG +P+++P+YG GELPQ F RLCAV+GG Y L++ ID+V
Sbjct: 221 SLSKYGGSPYIYPVYGLGELPQGFARLCAVWGGTYMLDKAIDEV 264
>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
Length = 175
Score = 64.1 bits (149), Expect = 8e-11
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +3
Query: 258 SLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKV 389
SL RYG +P+L+P+YG GE+PQ F RL A++GG Y L++PI+ +
Sbjct: 48 SLSRYGKSPYLYPLYGLGEIPQGFARLSAIYGGTYMLDKPIEAI 91
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 419 GFSFINGFRFDFIDGPIQAVDAAENCTEPAEALRQFSASIHGPQEWSVA 273
GF+FIN FD D I+A++ C P F G + S A
Sbjct: 143 GFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESKGERHGSAA 191
>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 22 AVGIVEKRMLMKMLTSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAIAG 201
+VG LM TS+ G S + +++EF++ ++K ++ H L H + Y +
Sbjct: 17 SVGAAMSINLMAEFTSL-GQSHDPVDDEFREQHDKVYEDDSKHHRLKHIFRHNVRYIRSM 75
Query: 202 GNNSLP 219
SLP
Sbjct: 76 NRRSLP 81
>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 88 EEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAIAGG 204
EE E +WN + +L KG+ N+ Y + A++ G
Sbjct: 902 EEAMIEAAEWNRVEVARWLVDKGVGDNVSGYTIAAVSNG 940
>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
Length = 1935
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 85 EEEMNNEFKDWNNKTLKEYLTHKGL 159
E E+ K+WN + +YL+ +G+
Sbjct: 1707 ERELREAIKEWNQAQIHDYLSQRGI 1731
>SB_31806| Best HMM Match : rve (HMM E-Value=1.9e-07)
Length = 353
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 85 EEEMNNEFKDWNNKTLKEYLTHKGL 159
E E+ K+WN + +YL+ +G+
Sbjct: 93 ERELREAIKEWNQAQIHDYLSQRGI 117
>SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1328
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 64 TSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLTP 165
T+ +G E E+ WN + + +LT +G+ P
Sbjct: 1157 TNFIG-GERELREAIGAWNQQKIANFLTQRGINP 1189
>SB_7924| Best HMM Match : CheC (HMM E-Value=8.9)
Length = 72
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 270 YGNTPFLWPMYGSGELPQCF-CR-LCAVFGGVYCLNRP 377
YG+ F WP+ S L + CR + +V+G V ++ P
Sbjct: 4 YGDATFYWPLESSSALKEVINCRNVSSVYGAVTSVSSP 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,746,413
Number of Sequences: 59808
Number of extensions: 420238
Number of successful extensions: 1257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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