Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30180
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.2  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 335 PAEALRQFSASIHGPQEWSVAISSEAHRNFLHSLT 231
           PAE L      +H P+  S+   S    N L  LT
Sbjct: 370 PAEGLEMKGQMVHCPESDSILFVSSPFLNGLEGLT 404


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 573  RNTALGDVRSFSAWFRRHQLPREL 502
            R T +  +RS S W  R  +  EL
Sbjct: 1669 RGTVIRSIRSHSTWDPRRHMYEEL 1692


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +1

Query: 79  YSEEEMNNEFKDWNNKTLKEY 141
           Y+    NN + ++NN     Y
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNY 349


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 150 VSQVFLQCLVVPVFKLIVHLLFAITDNRCQHFHEHPFLD 34
           V  VF   L V        LLF + +N    ++EH  LD
Sbjct: 297 VQDVFDSQLTVKAVSKNGVLLFGLANNTLSCWNEHQSLD 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,297
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)