Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30180
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 63 1e-10
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ... 62 4e-10
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 62 4e-10
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 50 2e-06
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 29 1.8
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 3.1
At4g27020.1 68417.m03886 expressed protein gene F20P5.12 of BAC ... 28 5.4
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 5.4
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 5.4
At2g34190.1 68415.m04184 xanthine/uracil permease family protein... 28 5.4
At5g54870.1 68418.m06835 expressed protein strong similarity to ... 27 9.5
At5g03330.2 68418.m00285 OTU-like cysteine protease family prote... 27 9.5
At5g03330.1 68418.m00284 OTU-like cysteine protease family prote... 27 9.5
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 63.3 bits (147), Expect = 1e-10
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +3
Query: 180 HTVRYRWREQQLALPR--RCQGMQEVPMSLGRY-GNTPFLWPMYGSGELPQCFCRLCAVF 350
H V +Q L P M+ SL R+ G +P+++P+YG GELPQ F RL AV+
Sbjct: 186 HAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAFARLSAVY 245
Query: 351 GGVYCLNRPIDKVETKTVDEG 413
GG Y LN+P KVE DEG
Sbjct: 246 GGTYMLNKPECKVE---FDEG 263
>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
strong similarity to GDP dissociation inhibitor protein
OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
PF00996: GDP dissociation inhibitor
Length = 365
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 SLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVE 392
SL R+ G +P+++P+YG GELPQ F RL AV+GG Y LN+P KVE
Sbjct: 134 SLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 179
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 SLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVE 392
SL R+ G +P+++P+YG GELPQ F RL AV+GG Y LN+P KVE
Sbjct: 214 SLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 259
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 258 SLGRYGNT--PFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPI 380
S+GR+ N ++P+YG GELPQ FCR AV G +Y L PI
Sbjct: 277 SMGRFSNALGALIYPIYGQGELPQAFCRRAAVKGCIYVLRMPI 319
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 40 KRMLMKMLTSIVGYSEEEMNNEFKDW 117
KRML + +I Y E ++N EF DW
Sbjct: 187 KRMLENRIPAIRSYVERKVNKEFGDW 212
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 252 ELLAFLDTFEAGQAVVPASDSVQYVVNEVRGQAL 151
++ F+D EA A+ PA+D ++ V E G AL
Sbjct: 390 DMFRFVDIPEANAAIPPANDVIEEKVPETEGAAL 423
>At4g27020.1 68417.m03886 expressed protein gene F20P5.12 of BAC
F20P5 from Arabidopsis thalianachromosome 1,
PID:g2194125
Length = 523
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 79 YSEEEMNNEFKDWNNKTLKEYLTHKGLT 162
++ E EFK+W K EY+ KG++
Sbjct: 130 FASREHTMEFKEWEGKAEYEYVKQKGVS 157
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 58 MLTSIVGYSEEEMNNEFKDWNNKTLKEYL 144
+L S+ S EE+++ F DWN L+ +L
Sbjct: 208 VLKSVGKLSNEELHSVFSDWNKGELESFL 236
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 58 MLTSIVGYSEEEMNNEFKDWNNKTLKEYL 144
+L S+ S EE+++ F DWN L+ +L
Sbjct: 208 VLKSVGKLSNEELHSVFSDWNKGELESFL 236
>At2g34190.1 68415.m04184 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 524
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 246 LAFLDTFEAGQAVVPASDSVQYVVNEVRGQALVSQVFLQCLVVPVFKLIVHLLF 85
L FL T A Q + + SVQ ++ + A+ S+ F +VPV L LF
Sbjct: 122 LRFLSTMRAVQGAIIVASSVQIILGFSQMWAICSRFFSPIGMVPVIALTGFGLF 175
>At5g54870.1 68418.m06835 expressed protein strong similarity to
unknown protein (pir||T04825)
Length = 531
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 103 EFKDWNNKTLKEYLTHKGLTPNLIH 177
EF +W+ K EY+ +KG++ L+H
Sbjct: 146 EFPEWDGKAEYEYVKNKGVSIFLMH 170
>At5g03330.2 68418.m00285 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 356
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 15 HRSGRYRREKDAHENADID 71
H+SG Y RE + H ++D+D
Sbjct: 45 HQSGEYYREYEDHRSSDVD 63
>At5g03330.1 68418.m00284 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 356
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 15 HRSGRYRREKDAHENADID 71
H+SG Y RE + H ++D+D
Sbjct: 45 HQSGEYYREYEDHRSSDVD 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,486
Number of Sequences: 28952
Number of extensions: 298638
Number of successful extensions: 968
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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