Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30179
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    85   1e-17
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    29   0.85 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.6  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   3.4  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    27   3.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   4.5  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   4.5  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   6.0  
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    26   6.0  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   7.9  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    25   7.9  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   7.9  

>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = +1

Query: 1   EKGSLFLRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQD---NEKLKS 171
           EKGS FL  +E +IGGP VF+ FL  Y + F++ +++  +FK  L+ YF       KL S
Sbjct: 383 EKGSNFLYEIERVIGGPSVFEPFLPFYFRKFAKSTVNEVKFKHALYEYFSPLGLASKLDS 442

Query: 172 VDWETWLYKSGMPPVIPDYDTSMTKP 249
           +DW+TW +  GMPPV P +DT++  P
Sbjct: 443 IDWDTWYHAPGMPPVKPHFDTTLADP 468


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 215 SYQTTILQ*RNR*RSRCEDQPAQRDADIL*RRANVYSSSNNDISARIDKTSSTAARYSP 391
           S  T IL+  NR  S+ +D    RD + L  + NV  + N D    ++ TSS +A  SP
Sbjct: 629 SEDTKILRLLNRSSSKLQD----RDQEYLISKNNVNGNGNRDWVQPVNTTSSVSAFASP 683


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 283 LRWLIFATRALSVSSLKYRSLV*RGAYRSCTTMFPNQRS--SIFHCLGN 143
           L+W+I   R  S S++ +  L   G   SC+TMFP   S   +  CL N
Sbjct: 540 LQWIIECLR--SQSTVPFYGLESYGLPHSCSTMFPQTLSLMQLLDCLLN 586


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 192 VQERYAPRHTRLRYFNDETDNALVAKINQRNATLISYEDVQ 314
           +QE   P    L       DN   A I + + T+ SYED++
Sbjct: 412 LQEHLGPLEVELASVKVLYDNCFQAGIEENDYTMFSYEDLE 452


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query: 55  VFDDFLRSYLKNFSRKSLDTD-EFKAYLFNYFQDNEKLKSVDWETWLYK 198
           VF+  L + LK+FSRKSLD++ E    LF+++    KL+  +   WL K
Sbjct: 581 VFEKHLNT-LKHFSRKSLDSEIEVVDELFSFW----KLQPFNAVMWLDK 624


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 225 LRYFNDETDNALVAKINQRNATL--ISYEDVQTFTPH 329
           ++ +ND    AL+AK++    TL  +  + +  FTPH
Sbjct: 689 VKVYNDSRVEALLAKVSSLEETLKILEQKSLPKFTPH 725


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 436 LKGGSRYRDLYRWLRLCLRSKDPIVLGRSVRFCEPTLGDGMPGMSVHCIRDLYRLG 603
           L+GG  +R +YRW +   ++K  I  GRS  F    + D  P + +  ++D+ + G
Sbjct: 129 LQGGDMHRQVYRWQQEVDQNKQ-IRRGRSRSF-SAKVSD--PNLHLRSVQDMKQAG 180


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 300 YEDVQTFTPHQIMIFLQELIKHPPLPLDILHTLGAEYKKFLGE 428
           Y D+QT TP ++M +  +  K   L     HT+  EY++   +
Sbjct: 85  YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTI-QEYQRIYAQ 126


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 550 DGMPGMSVHCIRDLYRLGKTLENP 621
           D +PGMSV  IR+LYR    + +P
Sbjct: 37  DILPGMSVDDIRNLYRKKSLMIHP 60


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 481 AATIYTNLGICYPLLKKFSPK 419
           A T Y+ + +CYPL++   P+
Sbjct: 263 ADTFYSEMAMCYPLMQGHQPE 283


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 606 DVRKSKQLENFLKKTDNY 659
           D+ K K LENFL + D+Y
Sbjct: 86  DMAKDKTLENFLAQMDDY 103


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +1

Query: 34  DLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQ 150
           DL+G  ++F+   +  +   + K++D  ++  Y F+  Q
Sbjct: 255 DLLGWQQIFELLCKESIFQSTTKTMDVSQYTDYTFSLLQ 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,657
Number of Sequences: 5004
Number of extensions: 68133
Number of successful extensions: 234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)