Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30179
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670...    52   3e-07
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    30   1.5  
01_06_1464 + 37537218-37537387,37537738-37537897,37539521-375397...    29   3.5  
05_05_0250 + 23609594-23610784                                         29   4.7  
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099...    28   6.2  
07_03_1673 - 28532923-28533009,28533058-28533117,28533664-285337...    28   6.2  

>03_06_0470 +
           34164873-34165856,34166335-34166568,34166680-34167006,
           34168426-34168716
          Length = 611

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/84 (34%), Positives = 47/84 (55%)
 Frame = +1

Query: 1   EKGSLFLRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQDNEKLKSVDW 180
           EKG  FL  +E  IG P  FD+FL++Y+  F  KS+DT+ F  +L       E    +D 
Sbjct: 394 EKGFQFLWRIERQIGRP-AFDEFLKNYISTFKFKSIDTETFLEFLKTNVPGIE--NQIDL 450

Query: 181 ETWLYKSGMPPVIPDYDTSMTKPI 252
           + W+  +G+PP   + ++++ K I
Sbjct: 451 QLWIEGTGIPPDAMEPESAIYKKI 474


>06_01_0090 -
           724296-724532,724756-724938,725038-725088,725520-725639,
           725738-725840,726106-726264,726728-726846,726891-727004,
           727119-727277,727404-727451,728464-728640,729064-729116,
           729549-729661,729793-729873,729966-730081,730786-730905,
           732321-732429,732593-732770,732852-732920,733102-733233,
           733657-733766,733843-734003,734081-734171,734258-734355,
           734499-734619,734732-734892,734985-735090,735142-735236,
           735828-735852,736008-736084,736196-736282,736372-736421,
           736558-736639,736735-736795,737064-737116,737206-737395,
           737472-737595,737860-737962,738064-738156,740344-740422,
           740508-740584,740915-741043,742614-742731,742816-742913,
           743457-743546,744998-745123,745238-745351,745488-745611,
           745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 630 ENFLKKTDNYMMHVWCSYCGKKI 698
           E FLK  DNYM   WC Y GK++
Sbjct: 326 EVFLKVLDNYMK--WCRYLGKRV 346


>01_06_1464 +
           37537218-37537387,37537738-37537897,37539521-37539787,
           37540541-37540646,37541411-37541678,37541915-37542020,
           37542891-37542950,37544349-37544445,37544613-37544803,
           37545518-37545583,37545879-37545944,37547510-37547583,
           37547910-37548000,37548079-37548236,37548424-37548466,
           37548621-37548686,37549113-37549190,37549361-37549453
          Length = 719

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 597 IGEDVRKSKQLENFLKKTDNYMMHVWC 677
           IGED  K  +LE  LKK    + +VWC
Sbjct: 74  IGEDRVKDSELELLLKKKSAPVCYVWC 100


>05_05_0250 + 23609594-23610784
          Length = 396

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 329 MRSKRLHVFIRYQRRVALVDLRNESVIGFVIE 234
           M   R+H F R +R+VA++    E VIG ++E
Sbjct: 167 MNGARVHAFWRMRRQVAVMPTAIEGVIGPILE 198


>08_02_0085 +
           12108474-12108552,12108656-12108759,12109726-12109925,
           12110003-12110103,12110184-12110379,12110584-12110745,
           12110856-12110937,12111741-12112004,12113047-12113174,
           12113795-12113957
          Length = 492

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 58  FDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQDNEKLKSVDWETWLYKSGMPPVI 219
           FDD     L+   RK  D ++   Y F++       KS+DW+ + YK  +P V+
Sbjct: 440 FDDINTEKLRITMRKQEDKND-GGYCFDFDP-----KSIDWDEYFYKVHIPGVV 487


>07_03_1673 -
           28532923-28533009,28533058-28533117,28533664-28533732,
           28534757-28534862,28535058-28535203,28535805-28536017,
           28536523-28536546,28536647-28536704,28536739-28537022,
           28538890-28539063,28539427-28539825
          Length = 539

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 597 IGEDVRKSKQLENFLKKTDNYMMHVWCSYC 686
           IGED    ++L+  LKK    + +VWC  C
Sbjct: 155 IGEDRVNDRELKLLLKKKHAPICYVWCDPC 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,196,633
Number of Sequences: 37544
Number of extensions: 438538
Number of successful extensions: 1085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)