Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30179
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 34 0.13
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 31 0.68
SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08) 31 0.90
SB_13370| Best HMM Match : RVT_1 (HMM E-Value=0.0042) 29 3.6
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9) 28 6.3
SB_2763| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.46) 28 6.3
SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_1225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 70.9 bits (166), Expect = 9e-13
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = +1
Query: 1 EKGSLFLRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQDNEKLKSVD 177
EKGS FL YLE L+GGPEVF+ F R Y+ + K+ TDE+K +LF+YF+D K ++
Sbjct: 148 EKGSCFLVYLEQLLGGPEVFEPFFRKYIDTYKYKTCTTDEWKTFLFDYFKDKASEKELN 206
>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 904
Score = 33.9 bits (74), Expect = 0.13
Identities = 24/71 (33%), Positives = 34/71 (47%)
Frame = +1
Query: 4 KGSLFLRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQDNEKLKSVDWE 183
KGS LR LED + G F L YLK + + +TD+ L + + +K V +
Sbjct: 586 KGSCILRMLEDFL-GENKFKKGLTRYLKRHAYGNAETDDLWKALKE--ESGQDVKGV-MD 641
Query: 184 TWLYKSGMPPV 216
TW + G P V
Sbjct: 642 TWTLQMGYPVV 652
>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 890
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 4 KGSLFLRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQDNEKLKSVDW- 180
KG+ LR LE +IG + F D LR YLK + + +TD+ V +
Sbjct: 397 KGATVLRMLEYIIGN-DTFIDGLRRYLKTHAYGNANTDDLWESFRQASCTRGSCVDVKYI 455
Query: 181 -ETWLYKSGMPPVI 219
+TW + G P V+
Sbjct: 456 MDTWTLQMGYPVVM 469
>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
Length = 457
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 1 EKGSLFLRYLEDLIGGP 51
EKGS FL YLE L+GGP
Sbjct: 309 EKGSCFLVYLEQLLGGP 325
>SB_13370| Best HMM Match : RVT_1 (HMM E-Value=0.0042)
Length = 388
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 475 LRLCLRSKDPIVLGRSVRFCEPTLGDGMPGMS 570
+RLCL KD R C PTLGD +P ++
Sbjct: 206 IRLCLDPKDLNKAIRRPHHCTPTLGDLLPKLN 237
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 698 NLFSTV*APHVHHVIVRFFEKVF*LLGFSNVFPNR*RSLIQWTDIPGIPSPNV 540
N TV + H+ V F +F G NV + +I W ++ G P P V
Sbjct: 2442 NSLKTVYSTPSIHLTVHFNSTIFECSGAQNVTERQNDDVIIWCEVEGKPKPEV 2494
>SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)
Length = 212
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 615 KSKQLENFLKKTDNYMMHVWCSY 683
K+K+ E+F K+ + Y++++W SY
Sbjct: 31 KAKKTESFEKEEETYLINLWVSY 53
>SB_2763| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.46)
Length = 336
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 67 FLRSYLKNFSRKSLDTDEFKAYLFNYFQDNEK 162
F+RS+ N R + D E YL YF + K
Sbjct: 91 FIRSFENNIDRNTSDESEKLTYLLQYFSGDAK 122
>SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 615 KSKQLENFLKKTDNYMMHVWCSY 683
K+K+ E+F K+ + Y++++W SY
Sbjct: 75 KAKKTESFEKEEETYLINLWVSY 97
>SB_1225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 615 KSKQLENFLKKTDNYMMHVWCSY 683
K+K+ E+F K+ + Y++++W SY
Sbjct: 75 KAKKTESFEKEEETYLINLWVSY 97
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 269 DQPAQRDADIL*RRANVYSSSNNDISARIDKTSSTAARYSPHS 397
D+P Q + R +N SS + ++ R D S +RY P S
Sbjct: 2939 DKPNQTSDRPMSRNSNSSSSRRSSLTPRNDSNGSNTSRYQPGS 2981
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,199,484
Number of Sequences: 59808
Number of extensions: 491018
Number of successful extensions: 1322
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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