BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30176 (708 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 85 9e-18 SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 69 7e-13 SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 62 6e-11 SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 62 1e-10 SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 53 4e-08 SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 52 8e-08 SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 51 1e-07 SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 2.0 SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 27 2.0 SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.1 >SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharomyces pombe|chr 3|||Manual Length = 253 Score = 85.0 bits (201), Expect = 9e-18 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 2/187 (1%) Frame = +1 Query: 106 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMN 285 MSSIGTGYDL FSPDGR+FQ EYA KAVEN+ T IG++ +DGV+ A+ + Sbjct: 1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLK 59 Query: 286 LAQTRGYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMN 465 + + + G + D + +V+R D + + + +P P + + Sbjct: 60 PRVNNRIGSVDRHIGIATTGF--IPD--GQHIVKR--ARDEATSWRDNYGSPIPGTVIAD 113 Query: 466 EFNVHARVHT-IQCCWPYGCSVVMGHMG-QTMEGPQMYMLDPSGVSFHILGCASGKAKQA 639 + ++ T P+G VM + EGP +YM++P+GV + G A+GK +Q Sbjct: 114 RLGNYVQLFTCYSSVRPFG---VMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQV 170 Query: 640 AKNRVGK 660 A+N + K Sbjct: 171 ARNELEK 177 Score = 66.5 bits (155), Expect = 4e-12 Identities = 28/59 (47%), Positives = 40/59 (67%) Frame = +3 Query: 246 ICCEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422 + EK++TSKL +P N RI +D H+G+A G I D + IV+ AR EA+++R YGSP Sbjct: 47 LALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSP 105 >SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces pombe|chr 2|||Manual Length = 259 Score = 68.9 bits (161), Expect = 7e-13 Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 4/189 (2%) Frame = +1 Query: 121 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTR 300 +GYD + S FSPDGR+ QVEY +AV T I LRG + +V V + P N++ + Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61 Query: 301 GYSILMN----MLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNE 468 +++ N A L+ + + DK +R+ Q H+ L++A P + T Y+ Sbjct: 62 KIAMVDNHVCLAFAGLNADARILIDK-ARVEAQNHK---LNLADPVSIEY--LTRYVAGV 115 Query: 469 FNVHARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKN 648 + + ++ P+G S ++ P++Y +P+G+ A G+A +AA+ Sbjct: 116 QQKYTQSGGVR---PFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAARE 172 Query: 649 RVGKSLKLG 675 + K+ K G Sbjct: 173 YLEKNWKEG 181 >SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces pombe|chr 3|||Manual Length = 245 Score = 62.5 bits (145), Expect = 6e-11 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 1/179 (0%) Frame = +1 Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306 Y S + FSP+G++ Q+EYA AV T +G++ DGVV A A Sbjct: 5 YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKV 64 Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEF-NVHA 483 + + + Y R+LV + + K + PPT+ L+ E +V Sbjct: 65 CAITPDIGMV----YSGMGPDFRVLVDKSRKV-AQTTYKKIYNEYPPTKILVQEIASVMQ 119 Query: 484 RVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGK 660 P+G S+++ M + +GP +Y +DPSG F A GK+ AAK + K Sbjct: 120 ESTQSGGVRPFGVSLLVAGMDE--KGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEK 176 >SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces pombe|chr 1|||Manual Length = 247 Score = 61.7 bits (143), Expect = 1e-10 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = +3 Query: 255 EKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPQG 428 EK +TS L E + +++F ID H+G A++GL +DAR I+E AR + N+R Y PQG Sbjct: 51 EKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQG 108 Score = 57.2 bits (132), Expect = 2e-09 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 2/180 (1%) Frame = +1 Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAV-RS*SHPNCMNLAQTRG 303 YD + FSP+GR+FQVEYA +A++ T IG++ KD VV V + + P + + + Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67 Query: 304 YSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEY-LMNEFNVH 480 + I ++ +S + + + VQ Q + P+G ++ + L F Sbjct: 68 FEIDSHIGCAISGLTADARTIIEHARVQT-QNHRFTYDEPQGIESTTQSICDLALRFGEG 126 Query: 481 ARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGK 660 P+G ++++ G GPQ+Y +PSG F A G + AK+ + K Sbjct: 127 EDGEERIMSRPFGVALLIA--GIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVK 184 >SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 244 Score = 53.2 bits (122), Expect = 4e-08 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 2/187 (1%) Frame = +1 Query: 124 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVRS*SHPNCMNLAQTR 300 G+D + + FSP+GR++QVEYA KA N+G T +G+ GK+ + ++ + + Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65 Query: 301 GYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVH 480 + + + GS + D +R V R ++ G+ P P + L Sbjct: 66 HVFPITKGIGCVMTGS--IAD--ARAQVSRARSEAAEFEYKNGY--PMPCDVLAKRMANI 119 Query: 481 ARVHTIQCCW-PYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVG 657 A+V T + P G ++ + + + GP ++ LDP+G ++G + N + Sbjct: 120 AQVSTQRAAMRPLGVAMTLVAVDDEI-GPSLFKLDPAGFYIGYKATSAGPKQTETINWLE 178 Query: 658 KSLKLGG 678 K K G Sbjct: 179 KRFKKDG 185 Score = 41.9 bits (94), Expect = 9e-05 Identities = 20/59 (33%), Positives = 32/59 (54%) Frame = +3 Query: 246 ICCEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422 + +K + KL + K +F I + +G + G I+DAR V ARSEA+ + + G P Sbjct: 48 VISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYP 106 >SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Schizosaccharomyces pombe|chr 1|||Manual Length = 272 Score = 52.0 bits (119), Expect = 8e-08 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 1/181 (0%) Frame = +1 Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306 YD A+ +SP GR+ QVEYA +A++ +GL K V N L+ + Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALK---RNAEELSSYQKK 62 Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVHAR 486 I ++ ++ ++ +++ + ++ F P P LM++ A+ Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTL-----FTRPIPVRRLMSKVAEKAQ 117 Query: 487 VHTIQC-CWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGKS 663 ++T + PYG ++ +G GP + PSG+ LG + G Q+A+ + ++ Sbjct: 118 INTQEYGRRPYGVGFLV--IGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERN 175 Query: 664 L 666 L Sbjct: 176 L 176 Score = 37.9 bits (84), Expect = 0.001 Identities = 15/42 (35%), Positives = 27/42 (64%) Frame = +3 Query: 297 KRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422 K++ ID+H+G+A+AGL DAR + + EA + ++ + P Sbjct: 61 KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRP 102 >SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 248 Score = 51.2 bits (117), Expect = 1e-07 Identities = 20/42 (47%), Positives = 31/42 (73%) Frame = +1 Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFA 252 YD + FSP+GR++QVEYA +A+ ++G +G+ KDG+V A Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLA 46 Score = 37.9 bits (84), Expect = 0.001 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Frame = +3 Query: 246 ICCEKLITSKLYEPGAN-KRIFHIDEHVGMAVAGLISDARQIVETARSEASNY 401 + EK +TSKL E + ++++HI +++ AVAGL +DA ++ AR Y Sbjct: 45 LAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQY 97 >SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces pombe|chr 3|||Manual Length = 354 Score = 27.5 bits (58), Expect = 2.0 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -2 Query: 527 TEQPYGQQHCIVCTRACTLNSFIK 456 T++P GQ+ C +C++ CT+ +IK Sbjct: 36 TKEPLGQE-CKICSKPCTIFRWIK 58 >SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 210 Score = 27.5 bits (58), Expect = 2.0 Identities = 15/53 (28%), Positives = 21/53 (39%) Frame = +1 Query: 91 KQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVF 249 KQC + S TG + G F V+Y KA +G + + VF Sbjct: 32 KQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPSQKTVALGKKRRQADVF 84 >SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 350 Score = 25.8 bits (54), Expect = 6.1 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = +1 Query: 79 SKYIKQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTV 216 S ++ + + + +G G +S +G V + KAVENS + Sbjct: 196 SSFVSRAASPAMVGPGVPFYSSITGANGNVLAPSGSLKAVENSDVI 241 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,357,052 Number of Sequences: 5004 Number of extensions: 76777 Number of successful extensions: 223 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 219 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 329179816 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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