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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30176
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    85   9e-18
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    69   7e-13
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    62   6e-11
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    62   1e-10
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    53   4e-08
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    52   8e-08
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    51   1e-07
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    27   2.0  
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    27   2.0  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 85.0 bits (201), Expect = 9e-18
 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
 Frame = +1

Query: 106 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMN 285
           MSSIGTGYDL    FSPDGR+FQ EYA KAVEN+ T IG++ +DGV+ A+        + 
Sbjct: 1   MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLK 59

Query: 286 LAQTRGYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMN 465
                    +   +   + G   + D   + +V+R    D + +    + +P P   + +
Sbjct: 60  PRVNNRIGSVDRHIGIATTGF--IPD--GQHIVKR--ARDEATSWRDNYGSPIPGTVIAD 113

Query: 466 EFNVHARVHT-IQCCWPYGCSVVMGHMG-QTMEGPQMYMLDPSGVSFHILGCASGKAKQA 639
               + ++ T      P+G   VM  +     EGP +YM++P+GV +   G A+GK +Q 
Sbjct: 114 RLGNYVQLFTCYSSVRPFG---VMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQV 170

Query: 640 AKNRVGK 660
           A+N + K
Sbjct: 171 ARNELEK 177



 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 28/59 (47%), Positives = 40/59 (67%)
 Frame = +3

Query: 246 ICCEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
           +  EK++TSKL +P  N RI  +D H+G+A  G I D + IV+ AR EA+++R  YGSP
Sbjct: 47  LALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSP 105


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 4/189 (2%)
 Frame = +1

Query: 121 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTR 300
           +GYD + S FSPDGR+ QVEY  +AV    T I LRG + +V  V   + P   N++  +
Sbjct: 2   SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61

Query: 301 GYSILMN----MLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNE 468
             +++ N      A L+  +  + DK +R+  Q H+   L++A P   +    T Y+   
Sbjct: 62  KIAMVDNHVCLAFAGLNADARILIDK-ARVEAQNHK---LNLADPVSIEY--LTRYVAGV 115

Query: 469 FNVHARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKN 648
              + +   ++   P+G S ++         P++Y  +P+G+       A G+A +AA+ 
Sbjct: 116 QQKYTQSGGVR---PFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAARE 172

Query: 649 RVGKSLKLG 675
            + K+ K G
Sbjct: 173 YLEKNWKEG 181


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 1/179 (0%)
 Frame = +1

Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
           Y  S + FSP+G++ Q+EYA  AV    T +G++  DGVV A            A     
Sbjct: 5   YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKV 64

Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEF-NVHA 483
             +   +  +    Y       R+LV + +         K +   PPT+ L+ E  +V  
Sbjct: 65  CAITPDIGMV----YSGMGPDFRVLVDKSRKV-AQTTYKKIYNEYPPTKILVQEIASVMQ 119

Query: 484 RVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGK 660
                    P+G S+++  M +  +GP +Y +DPSG  F     A GK+  AAK  + K
Sbjct: 120 ESTQSGGVRPFGVSLLVAGMDE--KGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEK 176


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 27/58 (46%), Positives = 39/58 (67%)
 Frame = +3

Query: 255 EKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPQG 428
           EK +TS L E  + +++F ID H+G A++GL +DAR I+E AR +  N+R  Y  PQG
Sbjct: 51  EKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQG 108



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
 Frame = +1

Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAV-RS*SHPNCMNLAQTRG 303
           YD   + FSP+GR+FQVEYA +A++   T IG++ KD VV  V +  + P   + +  + 
Sbjct: 8   YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67

Query: 304 YSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEY-LMNEFNVH 480
           + I  ++   +S  +   +  +    VQ  Q    +   P+G ++   +   L   F   
Sbjct: 68  FEIDSHIGCAISGLTADARTIIEHARVQT-QNHRFTYDEPQGIESTTQSICDLALRFGEG 126

Query: 481 ARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGK 660
                     P+G ++++   G    GPQ+Y  +PSG  F     A G   + AK+ + K
Sbjct: 127 EDGEERIMSRPFGVALLIA--GIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVK 184


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
 Frame = +1

Query: 124 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVRS*SHPNCMNLAQTR 300
           G+D + + FSP+GR++QVEYA KA  N+G T +G+ GK+      +       ++ +  +
Sbjct: 6   GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65

Query: 301 GYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVH 480
               +   +  +  GS  + D  +R  V R ++         G+  P P + L       
Sbjct: 66  HVFPITKGIGCVMTGS--IAD--ARAQVSRARSEAAEFEYKNGY--PMPCDVLAKRMANI 119

Query: 481 ARVHTIQCCW-PYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVG 657
           A+V T +    P G ++ +  +   + GP ++ LDP+G        ++G  +    N + 
Sbjct: 120 AQVSTQRAAMRPLGVAMTLVAVDDEI-GPSLFKLDPAGFYIGYKATSAGPKQTETINWLE 178

Query: 658 KSLKLGG 678
           K  K  G
Sbjct: 179 KRFKKDG 185



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +3

Query: 246 ICCEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
           +  +K +  KL +    K +F I + +G  + G I+DAR  V  ARSEA+ +  + G P
Sbjct: 48  VISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYP 106


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 1/181 (0%)
 Frame = +1

Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
           YD  A+ +SP GR+ QVEYA +A++     +GL  K   V         N   L+  +  
Sbjct: 6   YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALK---RNAEELSSYQKK 62

Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVHAR 486
            I ++    ++        ++    +++   +  ++     F  P P   LM++    A+
Sbjct: 63  LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTL-----FTRPIPVRRLMSKVAEKAQ 117

Query: 487 VHTIQC-CWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGKS 663
           ++T +    PYG   ++  +G    GP +    PSG+    LG + G   Q+A+  + ++
Sbjct: 118 INTQEYGRRPYGVGFLV--IGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERN 175

Query: 664 L 666
           L
Sbjct: 176 L 176



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 297 KRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
           K++  ID+H+G+A+AGL  DAR +    + EA + ++ +  P
Sbjct: 61  KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRP 102


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +1

Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFA 252
           YD   + FSP+GR++QVEYA +A+ ++G  +G+  KDG+V A
Sbjct: 5   YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLA 46



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +3

Query: 246 ICCEKLITSKLYEPGAN-KRIFHIDEHVGMAVAGLISDARQIVETARSEASNY 401
           +  EK +TSKL E   + ++++HI +++  AVAGL +DA  ++  AR     Y
Sbjct: 45  LAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQY 97


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 527 TEQPYGQQHCIVCTRACTLNSFIK 456
           T++P GQ+ C +C++ CT+  +IK
Sbjct: 36  TKEPLGQE-CKICSKPCTIFRWIK 58


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +1

Query: 91  KQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVF 249
           KQC  + S  TG     +     G  F V+Y  KA       +G + +   VF
Sbjct: 32  KQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPSQKTVALGKKRRQADVF 84


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 79  SKYIKQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTV 216
           S ++ +  + + +G G    +S    +G V     + KAVENS  +
Sbjct: 196 SSFVSRAASPAMVGPGVPFYSSITGANGNVLAPSGSLKAVENSDVI 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,052
Number of Sequences: 5004
Number of extensions: 76777
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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