Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30176
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            97   1e-20
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  56   4e-08
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            32   0.40 
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)                       32   0.40 
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)                     29   4.9  
SB_57002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = +3

Query: 255 EKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
           EKL+ SKLYE GANKRIFHID H+GMA+AGLI+D+RQIV TAR EA+NYRS YGSP
Sbjct: 180 EKLVLSKLYEYGANKRIFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSP 235



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 50/139 (35%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
 Frame = +1

Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
           YDLSASQFSPDGRVFQVEYA KAVENSGT I +R KDGVVF V              +  
Sbjct: 137 YDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKRI 196

Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVHAR 486
             +   +     G   + D    +   R +  +        + +P P +YL+N  +    
Sbjct: 197 FHIDTHIGMAIAG--LIADSRQIVATAREEAANYRSV----YGSPIPLKYLVNRVSGFIH 250

Query: 487 VHTIQCCW-PYGCSVVMGH 540
             T+     P+GC + + H
Sbjct: 251 AFTLYSAMRPFGCRIYVVH 269


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 9/196 (4%)
 Frame = +1

Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVF-----AVRS*SHPNCMNLA 291
           YD + + FSPDG +FQVEYA +AV+   T +G+RG + VV      AV     P  +   
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKI 64

Query: 292 QTRGYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEF 471
            T    +LM   A L+  +  + +K +R+  Q H+ T          ++P   EY+    
Sbjct: 65  CTLDDHVLM-AFAGLTADARILVNK-ARVECQSHKLT---------VEDPVTLEYITRFI 113

Query: 472 -NVHARVHTIQCCWPYGCSVVMGHMGQTMEG-PQMYMLDPSGVSFHI--LGCASGKAKQA 639
             +  R        P+G S ++  +G   +G P++Y  DPSG ++H   +  + GK  + 
Sbjct: 114 ATLKQRYTQSNGRRPFGISTLI--VGFDFDGTPRLYQTDPSG-TYHAWKVVQSGGKNIEL 170

Query: 640 AKNRVGKSLKLGGPNQ 687
           A  + G+ +++  P++
Sbjct: 171 AVMKKGEPMRILKPDE 186



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 33/56 (58%)
 Frame = +3

Query: 255 EKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
           E+   +KL EP   ++I  +D+HV MA AGL +DAR +V  AR E  +++     P
Sbjct: 48  ERKAVAKLQEPRTVRKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDP 103


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 511 PYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGKSLK 669
           P GC +++  + +  +GPQ+Y  DP+G       C+ G  +  A + + K +K
Sbjct: 111 PLGCGMILIGIDEE-KGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVK 162



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 124 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVV 246
           G+D   + FSP+GR++         +  G T +G+RG D  V
Sbjct: 8   GFDRHITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAV 49


>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 1737

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 529  VMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRV 654
            V G   Q +E P+   + P G+S  +L  A G  K+A  NR+
Sbjct: 1154 VSGESSQNLEEPRWRSISPEGMSSEMLQAALGNDKRARSNRL 1195


>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
          Length = 1065

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 346 SYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVHAR 486
           S  + D   R  V   +  D++   P+GF+ PPP   +    ++ AR
Sbjct: 449 SRSLNDTEKRYAVIEKEALDMAPPAPEGFEVPPPNGQVFTRGHLRAR 495


>SB_57002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 569 CIC*IPVVYLFIFWVAHREKPNRQPKTGLGK 661
           C+C  PV++LF+ +  H  +P  + K  L K
Sbjct: 125 CLCITPVLFLFLIFAHHDARPYSKRKLYLEK 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,255,849
Number of Sequences: 59808
Number of extensions: 593716
Number of successful extensions: 1299
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)