Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30176
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +1

Query: 400 TDLSMAVPKGFKNPP-PTEYLMNEFNVHARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYM 576
           T+ S    + + +P    +Y M +  ++A  + ++   PY  S    HM + + G   Y 
Sbjct: 204 TNYSSKYMREYNDPEYKLDYFMEDVELNAYYYYMREMLPYWMSSSQYHMPKEIRGQLYYF 263

Query: 577 LDPSGVSFHILGCASGKAKQAAKNRVGKSLKLG 675
           L    ++ + L   S    + A+    K +  G
Sbjct: 264 LHKQLMTRYFLERMSNDLGKTAEFDWNKPINSG 296


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 16/75 (21%), Positives = 31/75 (41%)
 Frame = +1

Query: 451 EYLMNEFNVHARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKA 630
           +Y M +  ++A  + ++   PY  S    HM + + G   Y L    ++ + L   S   
Sbjct: 222 DYFMEDVELNAYYYYMREMLPYWMSSSQYHMPKEIRGQLYYFLHKQLMTRYFLERMSNDL 281

Query: 631 KQAAKNRVGKSLKLG 675
            + A+    K +  G
Sbjct: 282 GKTAEFDWNKPINSG 296


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 322 CSSIWNILLFAPGSYNLDVINFS 254
           C SIW + + A   YN+ V   S
Sbjct: 137 CGSIWTMTMIAFDRYNVIVKGLS 159


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 442 PPTEYLMNEFNVHARVHTIQCCWPYGCSVVMG 537
           PP   +  E     ++ +     P GC+VV+G
Sbjct: 412 PPVPLIAREIKTDLKLASGDYTIPAGCTVVIG 443


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 322 CSSIWNILLFAPGSYNLDVINFS 254
           C SIW + + A   YN+ V   S
Sbjct: 103 CGSIWTMTMIAFDRYNVIVKGLS 125


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 322 CSSIWNILLFAPGSYNLDVINFS 254
           C SIW + + A   YN+ V   S
Sbjct: 13  CGSIWTMTMIAFDRYNVIVKGLS 35


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 686 WLGPPSFRLFPTL 648
           WL  PSF ++P+L
Sbjct: 167 WLQEPSFYIYPSL 179


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 686 WLGPPSFRLFPTL 648
           WL  PSF ++P+L
Sbjct: 167 WLQEPSFYIYPSL 179


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 350 YEPCDSHANMFINME 306
           Y P  SH+  ++NME
Sbjct: 268 YSPLTSHSLYYVNME 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,166
Number of Sequences: 438
Number of extensions: 5655
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)