Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30176
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 125 3e-29
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 67 9e-12
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 67 1e-11
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 67 1e-11
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 66 2e-11
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 63 2e-10
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 62 3e-10
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 57 1e-08
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 57 1e-08
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 54 7e-08
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 54 9e-08
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 54 1e-07
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 31 0.75
At1g43245.1 68414.m04985 expressed protein 30 1.3
At4g09620.1 68417.m01581 expressed protein hypothetical protein ... 28 7.0
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 125 bits (302), Expect = 3e-29
Identities = 78/188 (41%), Positives = 102/188 (54%), Gaps = 3/188 (1%)
Frame = +1
Query: 106 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMN 285
MSSIGTGYDLS + FSPDGRVFQ+EYAAKAV+NSGTV+G++ KDG+V V M
Sbjct: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMML 60
Query: 286 LAQTRGYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMN 465
R + G D R +V R ++ S G + P + L
Sbjct: 61 PGSNRRIHSVHRHAGMAVAG--LAAD--GRQIVARAKSEARSYESVYG--DAVPVKELSE 114
Query: 466 EFNVHARVHTIQCCW---PYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQ 636
V + VH W P+GC V++G G +GPQ+YM++PSG+S+ G A GK KQ
Sbjct: 115 --RVASYVHLCTLYWWLRPFGCGVILG--GYDRDGPQLYMIEPSGISYRYFGAAIGKGKQ 170
Query: 637 AAKNRVGK 660
AAK + K
Sbjct: 171 AAKTEIEK 178
Score = 70.5 bits (165), Expect = 1e-12
Identities = 50/136 (36%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Frame = +3
Query: 255 EKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPQGF* 434
EKLI SK+ PG+N+RI + H GMAVAGL +D RQIV A+SEA +Y S YG
Sbjct: 51 EKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGD----- 105
Query: 435 KPPPN*VFNERVQCTCTRTHYTVLLAIWLLSRYGA----HGTDYGRPSDVYARSQWCIFS 602
P +ERV + H L W L +G G D P +
Sbjct: 106 -AVPVKELSERV---ASYVHLCTL--YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYR 159
Query: 603 YFGLRIGKSQTGSQKQ 650
YFG IGK + ++ +
Sbjct: 160 YFGAAIGKGKQAAKTE 175
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 67.3 bits (157), Expect = 9e-12
Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 2/186 (1%)
Frame = +1
Query: 118 GTGYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVRS*SHPNCMNLAQ 294
G GYD + FSP+GR+FQVEYA KAV+ +G T IG+RGKD V + ++ +
Sbjct: 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSS 65
Query: 295 TRGYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFN 474
+ L L+ G D SR LVQ+ + G++ P + L
Sbjct: 66 VSHLFPVTKYLGLLATG--MTAD--SRSLVQQARNEAAEFRFQYGYE--MPADILAKWIA 119
Query: 475 VHARVHTIQCCWPYGCSVVMGHMGQTME-GPQMYMLDPSGVSFHILGCASGKAKQAAKNR 651
++V+T Q + VV +G E GP +Y DP+G + ++G +Q A N
Sbjct: 120 DKSQVYT-QHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNF 178
Query: 652 VGKSLK 669
+ K +K
Sbjct: 179 LEKKMK 184
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/57 (29%), Positives = 36/57 (63%)
Frame = +3
Query: 246 ICCEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYG 416
+ +K + KL + + +F + +++G+ G+ +D+R +V+ AR+EA+ +R QYG
Sbjct: 50 VVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYG 106
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = +3
Query: 246 ICCEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
+ EK ITS L EP + ++I ID+H+G A++GLI+DAR +VE AR E N+R YG P
Sbjct: 48 LAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEP 106
Score = 56.8 bits (131), Expect = 1e-08
Identities = 44/174 (25%), Positives = 74/174 (42%)
Frame = +1
Query: 121 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTR 300
T YD + FSP+GR+FQVEYA +A++ T IG++ K+GVV AV + +
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 301 GYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVH 480
+ + + G + D + + R +T + + + T+ L +
Sbjct: 66 KIMEIDDHIGCAMSG--LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRF 123
Query: 481 ARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAA 642
P+G S+++ G GP +Y DPSG + A G + A
Sbjct: 124 GEGEEESMSRPFGVSLLIA--GHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGA 175
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = +3
Query: 246 ICCEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
+ EK ITS L EP + ++I ID+H+G A++GLI+DAR +VE AR E N+R YG P
Sbjct: 48 LAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEP 106
Score = 56.8 bits (131), Expect = 1e-08
Identities = 44/174 (25%), Positives = 74/174 (42%)
Frame = +1
Query: 121 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTR 300
T YD + FSP+GR+FQVEYA +A++ T IG++ K+GVV AV + +
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 301 GYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVH 480
+ + + G + D + + R +T + + + T+ L +
Sbjct: 66 KIMEIDDHIGCAMSG--LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRF 123
Query: 481 ARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAA 642
P+G S+++ G GP +Y DPSG + A G + A
Sbjct: 124 GEGEEESMSRPFGVSLLIA--GHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGA 175
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 66.1 bits (154), Expect = 2e-11
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 2/186 (1%)
Frame = +1
Query: 118 GTGYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVRS*SHPNCMNLAQ 294
G GYD + FSP+GR+FQVEYA KAV+ +G T IG+RGKD V + ++ +
Sbjct: 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSS 65
Query: 295 TRGYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFN 474
+ + ++ G D +R LVQ+ + G++ P + L
Sbjct: 66 VTHLFPITKYIGLVATGI--TAD--ARSLVQQARNQAAEFRFTYGYE--MPVDILAKWIA 119
Query: 475 VHARVHTIQCCWPYGCSVVMGHMGQTME-GPQMYMLDPSGVSFHILGCASGKAKQAAKNR 651
++V+T Q + VV MG E GP +Y DP+G + ++G +Q A N
Sbjct: 120 DKSQVYT-QHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNF 178
Query: 652 VGKSLK 669
+ K +K
Sbjct: 179 LEKKMK 184
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/57 (29%), Positives = 35/57 (61%)
Frame = +3
Query: 246 ICCEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYG 416
+ +K + KL + + +F I +++G+ G+ +DAR +V+ AR++A+ +R YG
Sbjct: 50 VVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYG 106
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 62.9 bits (146), Expect = 2e-10
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 4/185 (2%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
YD + + FSPDG +FQVEYA +AV +G+RG D VV AV S P + R
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKI 63
Query: 307 SILMNMLAWLSQG---SYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEF-N 474
L N +A G ++ +R+ Q H+ T ++P EY+
Sbjct: 64 VSLDNHIALACAGLKADARVLINKARIECQSHRLT---------LEDPVTVEYITRYIAG 114
Query: 475 VHARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRV 654
+ + P+G S ++ P +Y DPSG A+G+ + + +
Sbjct: 115 LQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFL 174
Query: 655 GKSLK 669
K+ K
Sbjct: 175 EKNYK 179
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 62.5 bits (145), Expect = 3e-10
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 4/185 (2%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
YD + + FSPDG +FQVEYA +AV +G+RG D VV AV S P + R
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKI 63
Query: 307 SILMNMLAWLSQG---SYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEF-N 474
L N +A G ++ +R+ Q H+ T ++P EY+
Sbjct: 64 VSLDNHIALACAGLKADARVLINKARIECQSHRLT---------LEDPVTVEYITRYIAG 114
Query: 475 VHARVHTIQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRV 654
+ + P+G S ++ P +Y DPSG A+G+ + + +
Sbjct: 115 LQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFL 174
Query: 655 GKSLK 669
K+ K
Sbjct: 175 EKNYK 179
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 56.8 bits (131), Expect = 1e-08
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 2/175 (1%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
YD + +SP GR+FQVEYA +AV+ IGLR + VV A C+N AQ+
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLA--------CVNKAQSELS 57
Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVHAR 486
S + + + V S+ +++P P L+ A+
Sbjct: 58 SHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQ 117
Query: 487 VHTIQCCW--PYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAK 645
V T Q W PYG +++G + ++ G +Y PSG F A G QAAK
Sbjct: 118 VCT-QRSWKRPYGVGLLVGGLDES--GAHLYYNCPSGNYFEYQAFAIGSRSQAAK 169
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +3
Query: 297 KRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
++IF +D+H+G+A+AGL +D R + RSE+ N+ Y SP
Sbjct: 61 RKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESP 102
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 56.8 bits (131), Expect = 1e-08
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 2/175 (1%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
YD + +SP GR+FQVEYA +AV+ IGLR + VV A C+N AQ+
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLA--------CVNKAQSELS 57
Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVHAR 486
S + + + V S+ +++P P L+ A+
Sbjct: 58 SHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQ 117
Query: 487 VHTIQCCW--PYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAK 645
V T Q W PYG +++G + ++ G +Y PSG F A G QAAK
Sbjct: 118 VCT-QRSWKRPYGVGLLVGGLDES--GAHLYYNCPSGNYFEYQAFAIGSRSQAAK 169
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +3
Query: 297 KRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
++IF +D+H+G+A+AGL +D R + RSE+ N+ Y SP
Sbjct: 61 RKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESP 102
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 54.4 bits (125), Expect = 7e-08
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 1/179 (0%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
Y S + FSP G++ Q+E+A AV + T +G++ +GVV A ++ A +
Sbjct: 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKI 65
Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVHAR 486
L + + Y R+LV++ + + + +K P P L+ E +
Sbjct: 66 QHLTPNIGTV----YSGMGPDFRVLVRKSRKQ--AEQYLRLYKEPIPVTQLVRETATVMQ 119
Query: 487 VHTIQ-CCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGK 660
T P+G S+++ G +GPQ+Y +DPSG F A GK AK + K
Sbjct: 120 EFTQSGGVRPFGVSLLVA--GYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEK 176
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 54.0 bits (124), Expect = 9e-08
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 1/179 (0%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQTRGY 306
Y S + FSP G++ Q+E+A AV + T +G++ +GVV A ++ A +
Sbjct: 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKI 65
Query: 307 SILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVHAR 486
L + + Y R+LV++ + + + +K P P L+ E +
Sbjct: 66 QHLTPNIGVV----YSGMGPDFRVLVRKSRKQ--AEQYLRLYKEPIPVTQLVRETATVMQ 119
Query: 487 VHTIQ-CCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVGK 660
T P+G S+++ G +GPQ+Y +DPSG F A GK AK + K
Sbjct: 120 EFTQSGGVRPFGVSLLVA--GYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEK 176
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 53.6 bits (123), Expect = 1e-07
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVRS*SHPNCMNLAQT--R 300
YD + FSP+GR++QVEYA +A+ N+G+ IG+ KDGVV + + + +
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEK 64
Query: 301 GYSILMNMLAWLSQGSYQMQDKLSRLLVQRHQTTDLSMAVPKGFKNPPPTEYLMNEFNVH 480
Y I ++ ++ ++ VQ + T + ++ P P E L+
Sbjct: 65 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTFM-------YQEPMPVEQLVQSLCDT 117
Query: 481 ARVHT-IQCCWPYGCSVVMGHMGQTMEGPQMYMLDPSGVSFHILGCASGKAKQAAKNRVG 657
+ +T P+G S + + G Q+YM DPSG A G QAA++ +
Sbjct: 118 KQGYTQFGGLRPFGVSFLFAGWDK-HHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILK 176
Query: 658 KSLK 669
+ K
Sbjct: 177 QDYK 180
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 EKLITSKLYEPGAN-KRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSP 422
EK +TSKL + + ++++ ID+HV AVAG++SDA ++ TAR +A Y Y P
Sbjct: 48 EKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEP 104
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +3
Query: 255 EKLITSKLYEPGAN-KRIFHIDEHVGMAVAG 344
EK +TSKL + ++ ++++ ID+HV AVAG
Sbjct: 330 EKKVTSKLLQTSSSMEKMYKIDDHVACAVAG 360
>At1g43245.1 68414.m04985 expressed protein
Length = 558
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 167 TRPSGEN*EADRS*PVPIELMFTHCLIYFDFYQD 66
TR +GE E+ + V + L+ +HCL+Y D D
Sbjct: 510 TRTNGEREESSKDQTVNVLLLSSHCLLYADLLTD 543
>At4g09620.1 68417.m01581 expressed protein hypothetical protein
F6E13.15 - Arabidopsis thaliana,PIR2:T00682
Length = 212
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 495 YTVLLAIWLLSRYGAHGTDYGRPSDVYARSQWCIF 599
YT +L + L S Y HG + G + Y+RS+W +F
Sbjct: 31 YTNVLPLRLNSSY--HGVNGGVRTSSYSRSKWIVF 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,653,492
Number of Sequences: 28952
Number of extensions: 406595
Number of successful extensions: 1126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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