Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30175
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    60   3e-10
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   1.8  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    25   7.4  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   9.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 28/57 (49%), Positives = 37/57 (64%)
 Frame = +1

Query: 229 PLPYIINFKRIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAIN 399
           P   ++    + E G G G TVYPPLSS  +H G ++DLAI SL L GISS +G++N
Sbjct: 114 PALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVN 170



 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +2

Query: 17  LIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIA 190
           +IR EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A
Sbjct: 41  IIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVA 100

Query: 191 FPRINNIRF 217
           +PR+NN  F
Sbjct: 101 YPRVNNFTF 109



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 590 FLDPAGGGDPHLYPHLIF 643
           F  P GGGDP LY HL +
Sbjct: 226 FYAPEGGGDPVLYQHLFW 243


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 572 FPIW*IILLIAPSLKPVVIIIKKWL 498
           +P W + ++IA S+ P V++I +W+
Sbjct: 471 YPAWIVQIVIAWSVSPFVLLIIRWI 495


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 304 LSSNIAHRGRSVDLAIFSLHLAGISSIIGAIN 399
           ++ NI + GRS  + +  L +AGIS I  A++
Sbjct: 109 VAPNIYYMGRSSVINVGGLRIAGISGIYSAMD 140


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 471 PICMSCRGLQPFFYYYHYRF*AGGY*QYYLPDRKPLNTPIFWIPPEEG 614
           P+  S +G+ PF     +R  A  + ++  P    + T +F+I P EG
Sbjct: 27  PVTASVQGINPF-----HRLEADDF-KWSTPSSSHVETQVFYIKPNEG 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,195
Number of Sequences: 5004
Number of extensions: 39952
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)