Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30175
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83731-3|CAB06020.2|  248|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    27   9.0  

>Z83731-3|CAB06020.2|  248|Caenorhabditis elegans Hypothetical
           protein M04C9.2 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 537 GGY*QYYLPDRKPLNTPIFWIPPEEG 614
           GGY  Y     +P+NT +  IPP EG
Sbjct: 200 GGYLYYLSLRERPINTLLIHIPPFEG 225


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 551 ILFTRSETFKYPH---FLDPAGGGDPHLYPHLIFGIF 652
           +LFT+   F   H   F DP  G DP+LY + I+ IF
Sbjct: 184 MLFTKPIIFNLTHMSWFFDPGVGKDPNLYVN-IYHIF 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,688,796
Number of Sequences: 27780
Number of extensions: 237538
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)