Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30174
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         26   0.40 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.0  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   5.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.6  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   8.7  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 57  SKNKTKGKAFRTETTRTNPMMMALTSIASVPRR 155
           S++K + K  R + TR NP     TS    PRR
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPRTSRTEPPRR 245


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 782  KFLMGFLPTGGTKTD 738
            K L+GFL +GGT  D
Sbjct: 1090 KSLLGFLQSGGTSDD 1104


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 782  KFLMGFLPTGGTKTD 738
            K L+GFL +GGT  D
Sbjct: 1090 KSLLGFLQSGGTSDD 1104


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 782  KFLMGFLPTGGTKTD 738
            K L+GFL +GGT  D
Sbjct: 1090 KSLLGFLQSGGTSDD 1104


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 782  KFLMGFLPTGGTKTD 738
            K L+GFL +GGT  D
Sbjct: 1090 KSLLGFLQSGGTSDD 1104


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 541 PEEQAEEDLPGPTSLHGAQT*SMTL*LLPHRKTPFAPFFWPA 416
           PE    E+  GP  L  ++         P +KT   P  WPA
Sbjct: 160 PEVGGVEEAKGPVDLSKSE---------PEKKTESQPMLWPA 192


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 734 GDLFWFPPWV 763
           GD+FWF P++
Sbjct: 392 GDIFWFSPFL 401


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 347 FDMPPGKGMQTGLGLRLDRVLFVITFLPKLRIPT 246
           F +PP  G +  LG+ +   L V   L   +IPT
Sbjct: 233 FTLPPDSGEKLTLGVTILLSLTVFLNLVAEKIPT 266


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 347 FDMPPGKGMQTGLGLRLDRVLFVITFLPKLRIPT 246
           F +PP  G +  LG+ +   L V   L   +IPT
Sbjct: 233 FTLPPDSGEKLTLGVTILLSLTVFLNLVAEKIPT 266


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 115 IGFVLVVSVLNAFPLVLFFDTF 50
           + FVL++  L+    ++FFD F
Sbjct: 164 MNFVLLIGDLHTSIYIIFFDMF 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,676
Number of Sequences: 336
Number of extensions: 3531
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)