Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30174
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   2.3  
SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_29747| Best HMM Match : Ank (HMM E-Value=0)                         28   7.7  

>SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 24.6 bits (51), Expect(2) = 2.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 77  KSIQNRNDEDKPDDD 121
           KS  N ND+D  DDD
Sbjct: 117 KSFNNNNDDDDDDDD 131



 Score = 23.8 bits (49), Expect(2) = 2.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 95  NDEDKPDDDGINKY 136
           +D+D  DDD +N+Y
Sbjct: 145 DDDDDDDDDNVNRY 158


>SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 121 IIIGFVLVVSVLNAFPLVLFFDTFR 47
           IIIG +  VS L A PL L   TFR
Sbjct: 149 IIIGLIWFVSALTALPLALVVTTFR 173


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 86  QNRNDEDKPDDDGIN-KYCKCSEAFCNCC 169
           +++ +E+KP+  G+   YCK S    NCC
Sbjct: 296 EHKINEEKPETKGVKCAYCKGSHHLDNCC 324


>SB_29747| Best HMM Match : Ank (HMM E-Value=0)
          Length = 416

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 430 KGQKGFFCEAAVRVSCFKFGPRGVTSGPADPLPL 531
           + Q+ + C A  R+ CFK G      GP DPL L
Sbjct: 243 EAQRFYHCTAQDRIQCFKMG------GPGDPLVL 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,761,945
Number of Sequences: 59808
Number of extensions: 457138
Number of successful extensions: 1690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)