Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30174
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-4|CAB02844.1|  219|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF022979-1|AAO26005.1|  198|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    28   9.0  

>Z81048-4|CAB02844.1|  219|Caenorhabditis elegans Hypothetical
           protein C41G7.6 protein.
          Length = 219

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 50  KSVKKQNQRKSIQNRNDEDKPDDD 121
           KS K +  +KS + + DEDK DDD
Sbjct: 178 KSKKSKKSKKSKREKKDEDKKDDD 201



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 47  SKSVKKQNQRKSIQNRNDEDKPDDD 121
           SK  KK  + K  +++ D+DK DDD
Sbjct: 182 SKKSKKSKREKKDEDKKDDDKKDDD 206


>AF022979-1|AAO26005.1|  198|Caenorhabditis elegans Hypothetical
           protein T02B11.3a protein.
          Length = 198

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 125 INKYC-----KCSEAFCNCCRDFSVPVINLNGPGCATLM 226
           +NK C     K +    NCC+ ++V V+N+ G  C  ++
Sbjct: 159 VNKVCTALSKKMTAKEWNCCKQYAVKVVNVKGYACYNIV 197


>AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical
           protein C11D9.1 protein.
          Length = 569

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 133 VLQVFRGVLQLLPGFFRSGYKFKWPRMCDFN 225
           V+ VF  ++ LLP + R   K KW R+   N
Sbjct: 448 VVFVFHSLILLLPSYARKEIKMKWTRVLPIN 478


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 50  KSVKKQNQRKSIQNRNDEDKPDDD 121
           KS K +  +KS + + DEDK +DD
Sbjct: 155 KSSKSKKSKKSKREKKDEDKKEDD 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,251
Number of Sequences: 27780
Number of extensions: 340756
Number of successful extensions: 1033
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)