Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30174
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N domain-...    31   0.68 
At5g63730.1 68418.m07999 IBR domain-containing protein contains ...    29   4.8  
At5g06060.1 68418.m00671 tropinone reductase, putative / tropine...    28   6.3  

>At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N
           domain-containing protein / octicosapeptide/Phox/Bemp1
           (PB1) domain-containing protein contains Pfam profiles
           PF00627: Ubiquitin-associated (UBA)/TS-N domain,
           PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain
          Length = 704

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +1

Query: 265 GKKVITNRTLSSRKPSPVCMPLPGGISKFCGRVYNIARAGEEFRAC 402
           GKK I+ RT + RKP  +  P  G  SK  G V N +  G  F  C
Sbjct: 199 GKKDISERTQTGRKPVNLNEP-TGAHSKTSGHVPNSSGLGANFNEC 243


>At5g63730.1 68418.m07999 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
           domain
          Length = 506

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +2

Query: 83  IQNRNDEDKPDDDGINKYCKCSEAFCNCCRDFSVPVINLNGPG---CATLMYLNGDKMSV 253
           I+   + D  D+  +N  C C   FC  CR  S   ++ N      C+  M ++ +  S+
Sbjct: 189 IEFHQENDDDDEYSLNVVCICGHIFCWRCRLESHRPVSCNKASDWLCSATMKISDESFSL 248

Query: 254 F*ASVK 271
           +    K
Sbjct: 249 YPTKTK 254


>At5g06060.1 68418.m00671 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 264

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 340 ISKFCGRVYNIARAGEEFRACLGLELQAKKKGQKGFFCEAAVR 468
           ++KF  +V+  +R  EE  ACL  + +A      G  C+A+VR
Sbjct: 31  LAKFGAKVHTCSRNQEELNACLN-DWKANGLVVSGSVCDASVR 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,055
Number of Sequences: 28952
Number of extensions: 320036
Number of successful extensions: 870
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)