Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30173
         (581 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K6H1 Cluster: Putative uncharacterized protein; n=1; ...    41   0.019
UniRef50_UPI0000ECBD62 Cluster: UPI0000ECBD62 related cluster; n...    35   1.6  
UniRef50_UPI0000F2BA5D Cluster: PREDICTED: similar to coiled-coi...    33   3.7  
UniRef50_Q5KTL8 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  
UniRef50_A5K8S1 Cluster: DEAD/DEAH box helicase, putative; n=1; ...    33   3.7  
UniRef50_Q5CKZ8 Cluster: Putative uncharacterized protein; n=2; ...    33   6.5  
UniRef50_Q08646 Cluster: Sporulation-specific protein 2; n=2; Sa...    33   6.5  
UniRef50_Q7RIA9 Cluster: Immediate early protein homolog; n=3; P...    32   8.6  
UniRef50_Q6C361 Cluster: Similar to tr|O42970 Schizosaccharomyce...    32   8.6  
UniRef50_Q7RX84 Cluster: Pre-mRNA-splicing factor cwc-22; n=18; ...    32   8.6  

>UniRef50_A5K6H1 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 3077

 Score = 41.1 bits (92), Expect = 0.019
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = -3

Query: 234  TCSSTTRSPGLCSPGFC*PGHCSRGLCSWYIC 139
            +CS    SPG CSPG C PG+CS+G C+   C
Sbjct: 1117 SCSPGNCSPGNCSPGNCSPGNCSQGNCAQGHC 1148



 Score = 38.7 bits (86), Expect = 0.099
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = -3

Query: 231  CSSTTRSPGLCSPGFC*PGHCSRGLCSWYIC 139
            CS    SPG CS G C  GHCS+G CS   C
Sbjct: 1128 CSPGNCSPGNCSQGNCAQGHCSQGHCSQENC 1158



 Score = 37.5 bits (83), Expect = 0.23
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -3

Query: 231  CSSTTRSPGLCSPGFC*PGHCSRGLCSWYIC 139
            CS    SPG CSPG C  G+C++G CS   C
Sbjct: 1123 CSPGNCSPGNCSPGNCSQGNCAQGHCSQGHC 1153


>UniRef50_UPI0000ECBD62 Cluster: UPI0000ECBD62 related cluster; n=3;
           Gallus gallus|Rep: UPI0000ECBD62 UniRef100 entry -
           Gallus gallus
          Length = 352

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +3

Query: 60  VGRCTTNTEITKGNKT----NKNFQEEHLVGRCTTNTGRANNGRANKSRANKGRA 212
           + + T NT+  K NK+    N++ ++E+   +   NT RAN  RAN  RAN  RA
Sbjct: 45  IAKKTKNTKNQKQNKSTIHKNRHTKKENEGKKIKANTQRANTKRANTQRANTKRA 99



 Score = 32.3 bits (70), Expect = 8.6
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +3

Query: 78  NTEITKGNKT----NKNFQEEHLVGRCTTNTGRANNGRANKSRANKGRA 212
           NT+  K NK+    N++ ++E+   +   NT RAN  RAN  RAN  RA
Sbjct: 240 NTKKQKQNKSTIHKNRHTKKENEGKKIKANTKRANTKRANTKRANTKRA 288


>UniRef50_UPI0000F2BA5D Cluster: PREDICTED: similar to coiled-coil
           domain containing 17,; n=1; Monodelphis domestica|Rep:
           PREDICTED: similar to coiled-coil domain containing 17,
           - Monodelphis domestica
          Length = 783

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 421 PQTPSGPPFDPPSLAHSFVGPRSRE 495
           P+ P GPP DPP L    +GPRS E
Sbjct: 467 PRPPPGPPRDPPFLGMMSLGPRSGE 491


>UniRef50_Q5KTL8 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 173

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 210 AIEWSMSTSARDGC 251
           AIEW+MSTSARDGC
Sbjct: 1   AIEWTMSTSARDGC 14


>UniRef50_A5K8S1 Cluster: DEAD/DEAH box helicase, putative; n=1;
           Plasmodium vivax|Rep: DEAD/DEAH box helicase, putative -
           Plasmodium vivax
          Length = 862

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 153 NTGRANNGRANKSRANKGRA-IEWSMSTSA 239
           N+GRANN R N  RAN+GR+ +  S  +SA
Sbjct: 800 NSGRANNARNNSERANRGRSNVRGSHGSSA 829


>UniRef50_Q5CKZ8 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium hominis
          Length = 290

 Score = 32.7 bits (71), Expect = 6.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 81  TEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
           TEI KGN T K+F++E L      +       + NK++ANK
Sbjct: 185 TEIVKGNTTAKDFEKEGLQRYVRDDGSNTITNKNNKNKANK 225


>UniRef50_Q08646 Cluster: Sporulation-specific protein 2; n=2;
           Saccharomyces cerevisiae|Rep: Sporulation-specific
           protein 2 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 371

 Score = 32.7 bits (71), Expect = 6.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 72  TTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANKGRAIE 218
           +T   I K    N+  +EE  + RC      +     NKS  NKG+ +E
Sbjct: 245 STYENIMKEQSVNRIIEEEKFISRCLIVKKSSTTAMPNKSNLNKGQTLE 293


>UniRef50_Q7RIA9 Cluster: Immediate early protein homolog; n=3;
            Plasmodium (Vinckeia)|Rep: Immediate early protein
            homolog - Plasmodium yoelii yoelii
          Length = 1545

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 119  PGRALSRQMYHEHR-PREQWPG*QKPGEQRPGDRVVDEHVRA*RVP 253
            P +    Q + + + P +Q+PG Q PG+Q PG +V+ + +   ++P
Sbjct: 1256 PAQQFPGQQFPDQQFPGQQFPGQQFPGQQFPGQQVLAQQIPVQQIP 1301


>UniRef50_Q6C361 Cluster: Similar to tr|O42970 Schizosaccharomyces
           pombe SPBC1E8.05 Serine rich protein; n=1; Yarrowia
           lipolytica|Rep: Similar to tr|O42970 Schizosaccharomyces
           pombe SPBC1E8.05 Serine rich protein - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 282

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 39  TLPGRQFVGRCTTNTEITKGNKTNKNFQE--EHLVGRCTTNTGRANNGRANKSRANKGRA 212
           T+P    V   TT    T+   T+        ++VG   +N   + NG    SR++ G A
Sbjct: 159 TVPVASTVANTTTEVSSTEAESTSSTASAVTTNIVGAGVSNGTGSTNGSVPNSRSSSGAA 218

Query: 213 IEWSMSTSAR 242
              ++STS R
Sbjct: 219 SRTTLSTSGR 228


>UniRef50_Q7RX84 Cluster: Pre-mRNA-splicing factor cwc-22; n=18;
            Dikarya|Rep: Pre-mRNA-splicing factor cwc-22 - Neurospora
            crassa
          Length = 1010

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -1

Query: 530  TYMNSRYKDPAPSRDRGPTKLCARDGGSKGGPEGVWGGERNR 405
            +Y  SR + P P R  GP     RD G + GP    GG RNR
Sbjct: 904  SYSRSRSRSPIPIRGNGP---AGRDTG-RAGPAPARGGRRNR 941


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,393,244
Number of Sequences: 1657284
Number of extensions: 9584887
Number of successful extensions: 39918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39427
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40404161459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)