Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30173
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    32   0.070
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   2.0  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   3.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.1  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 31.9 bits (69), Expect = 0.070
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 373 IYAKILVCYIILLRSPPQTPSGPPFDPPS 459
           +Y  I+ CY++   +PP +PS   FDP S
Sbjct: 56  LYIMIVTCYVLTNLTPPGSPSETSFDPNS 84


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 75  WYICRQTVFLEVFNCFVSFCYFRF 4
           W I  +  F  V+ CF+ +C F F
Sbjct: 721 WEIRHRGAFTSVYPCFIEYCSFLF 744


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 72  TTNTEITKGNKTNKNFQEEHLV--GRCTTNTGRANNGRANKSRANKGRAIE 218
           T+ T+ ++GNK +KN +E   +   R   N    +N + N   + K R  E
Sbjct: 68  TSKTQDSEGNKVDKNLKENKSIRRKRSIDNDYELSNVKRNDITSGKNREFE 118


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 418 PPQTPSGPPFDPPSLAHSFVGPRSR 492
           PP TP+ PP   P++  S +G  S+
Sbjct: 175 PPSTPTPPPVWAPTIVSSALGTSSK 199


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 129 HLVGRCTTNTGRANNGRANKSRANKGRAIEWS 224
           HL GR T N+         KS A K + + W+
Sbjct: 858 HLSGRTTRNSASPGIVSGKKSYAKKDQVLSWA 889


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 142 LPTKCSSWKFLFVLFPFVISVFVVHL 65
           LP     + +L+VLF + IS+F++++
Sbjct: 189 LPQPGDGFLYLYVLFTYFISIFLLYV 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,127
Number of Sequences: 5004
Number of extensions: 37989
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)