Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30173
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1119 + 26213719-26213955,26214039-26214197,26214640-262147... 30 1.5
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 29 2.0
09_03_0198 - 13419630-13419806 29 2.7
04_03_0480 - 16427453-16427461,16427921-16428115 29 2.7
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716... 29 3.6
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 29 3.6
04_03_1017 + 21747044-21748051 29 3.6
02_01_0302 - 2021221-2023305 29 3.6
11_04_0227 + 15094941-15095445,15095773-15095865,15096209-150963... 27 8.2
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 27 8.2
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 27 8.2
02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500... 27 8.2
>12_02_1119 +
26213719-26213955,26214039-26214197,26214640-26214702,
26214813-26214902,26214984-26215106,26215344-26215431,
26217043-26217117,26218109-26218215
Length = 313
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 400 IILLRSPPQTPSGPPFDPPSLAHSFVGPRSREGAGSLYLL 519
++LLR PP P PP PP S A +L LL
Sbjct: 9 LLLLRPPPPPPPPPPNSPPFATTRRASSASAAAAAALLLL 48
>01_06_0923 + 33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 503 PAPSRDRGPTKLCARDGGSKGGPEGVWGGE 414
P PS +R T A GG G EG +GGE
Sbjct: 986 PLPSPERETTDAAASGGGGGVGVEGSYGGE 1015
>09_03_0198 - 13419630-13419806
Length = 58
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 521 NSRYKDPAPSRDRGPTKLCARDGGSKGGPEGVWG 420
+SR DP PS +G T D GS G G+ G
Sbjct: 9 SSRGADPPPSSTKGVTTTLGSDSGSDGATLGMGG 42
>04_03_0480 - 16427453-16427461,16427921-16428115
Length = 67
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 491 RDRGPTKLCARDGGSKGGPEGVWGGERNR 405
R RG AR GG+ GG E GG+R R
Sbjct: 15 RRRGEAATAARQGGAGGGRERRLGGKRRR 43
>08_02_1258 -
25670092-25670152,25671124-25671327,25671400-25671611,
25671701-25671749,25671833-25672612,25672696-25672767,
25672907-25672954,25673053-25673127,25673238-25673312,
25673614-25673668,25673931-25674016,25674759-25674988
Length = 648
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 412 RSPPQTPSGPPFDPPSLAHSFVGPRSREGAG 504
RS P P PP PP + H R EG G
Sbjct: 26 RSSPSLPPPPPGPPPQVPHGSKRHRRDEGGG 56
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 455 GGSKGGPEGVWGGERNRI 402
GG+ G P GV GGER R+
Sbjct: 210 GGAGGAPRGVSGGERKRV 227
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 415 SPPQTPSGPPFDP-PSLAHSFVGPRSR 492
SP TPS PP P PS A SF P R
Sbjct: 275 SPDYTPSTPPSSPLPSAAESFTVPPPR 301
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 415 SPPQTPSGPPFDPPSLAHSFVGPRSREGAG 504
S P +PSGP F PP H+ P G
Sbjct: 625 STPPSPSGPSFHPPPTPHNCSPPSHGSSTG 654
>11_04_0227 +
15094941-15095445,15095773-15095865,15096209-15096308,
15096799-15096874,15099906-15100017,15100924-15101012,
15101137-15101223,15101623-15101678,15102114-15102462
Length = 488
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 418 PPQTPSGPPFDPPSLAHSFVGPRSRE 495
PP + PP PPS +H +G + E
Sbjct: 378 PPSASTPPPTSPPSSSHMGIGSHTAE 403
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 409 LRSPPQTPSGPPFDPPSLAHSFVGPR 486
LRSPP+ P+ PP PSL +F P+
Sbjct: 480 LRSPPRQPTPPP--SPSLQPAFPAPQ 503
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +1
Query: 421 PQTPSGPPFDPPSLAHSFVG---PRSR 492
P PS PP PP L HS PRSR
Sbjct: 7 PPPPSSPPSSPPPLRHSPAALGTPRSR 33
>02_04_0540 +
23748610-23748930,23749054-23749157,23749889-23750063,
23750149-23750212,23750867-23750946,23751128-23751287,
23751415-23751476,23751607-23751666,23751824-23751882,
23752194-23752275,23752691-23752740,23752847-23752980,
23753508-23753590,23754070-23754142,23754461-23754477
Length = 507
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 479 PTKLCARDGGSKGGPEGVWG 420
P+K A+ GS GG +G WG
Sbjct: 35 PSKTLAKGRGSAGGGDGAWG 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,753,433
Number of Sequences: 37544
Number of extensions: 271436
Number of successful extensions: 1207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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