Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30173
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28441| Best HMM Match : GLTT (HMM E-Value=3.7e-28) 32 0.30
SB_44300| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.2) 31 0.91
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8) 31 0.91
SB_12320| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 29 2.8
SB_754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 29 3.7
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 29 3.7
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 29 3.7
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_43479| Best HMM Match : GLTT (HMM E-Value=0.66) 27 8.5
SB_48617| Best HMM Match : Drf_FH1 (HMM E-Value=3.7) 27 8.5
SB_2890| Best HMM Match : rve (HMM E-Value=0.044) 27 8.5
>SB_28441| Best HMM Match : GLTT (HMM E-Value=3.7e-28)
Length = 447
Score = 32.3 bits (70), Expect = 0.30
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 231 CSSTTRSPGLCSPGFC*PGHCSRGLCSWYIC 139
C++ + G+C+ G C G C+ G+C+ IC
Sbjct: 393 CTTGICTTGICTTGICTTGICTTGICTTGIC 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYIC 139
G+C+ G C G C+ G+C+ IC
Sbjct: 391 GICTTGICTTGICTTGICTTGIC 413
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 231 CSSTTRSPGLCSPGFC*PGHCSRGLCS 151
C++ + G+C+ G C G C+ G+C+
Sbjct: 398 CTTGICTTGICTTGICTTGICTTGICT 424
>SB_44300| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.2)
Length = 467
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTN---TGRANNGRANKSRANKGR 209
GR+F GR T E T + T + F GR T TGR GR R GR
Sbjct: 3 GREFTGREFTGREFTGRDFTGREFTGREFTGREFTGREFTGREFTGREFTGREFTGR 59
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTN---TGRANNGRANKSRANKGR 209
GR+F GR T E T T + F GR T TGR GR R GR
Sbjct: 33 GREFTGREFTGREFTGREFTGREFTGREFTGRQFTGRQFTGREFTGREFTGRQFTGR 89
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTN---TGRANNGRANKSRANKGR 209
GRQF GR T E T T + F GR T TGR GR R GR
Sbjct: 63 GRQFTGRQFTGREFTGREFTGRQFTGRQFTGREFTGREFTGREFVGREFTVREFVGR 119
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/54 (38%), Positives = 22/54 (40%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANKGR 209
GR FVGR T E T + F VGR TGR GR R GR
Sbjct: 203 GRGFVGREFTGREFVGREFTGREFTGREFVGR--EFTGREFTGREFTGREFTGR 254
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTN---TGRANNGRANKSRANKGR 209
GR+F GR T +E T + F VGR TGR GR R GR
Sbjct: 173 GREFTGREFTGSEFTGSEGVGRGFVGRGFVGRGFVGREFTGREFVGREFTGREFTGR 229
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRA 167
GR+FVGR T E T T + F +GR GRA
Sbjct: 228 GREFVGREFTGREFTGREFTGREFTGREFLGR--EGVGRA 265
>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
Length = 551
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T NK+NK E+ +C T R+N ++R+NK
Sbjct: 258 TSSNKSNKCNTSENRSNKCNTRESRSNKCNTRENRSNK 295
Score = 30.7 bits (66), Expect = 0.91
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANKGRAIE 218
T+ N++NK E +C T+ R+N +SR+NK + E
Sbjct: 288 TRENRSNKCNTSESRSNKCNTSENRSNKCNTRESRSNKCKTRE 330
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T N++NK E+ +C T+ R+N ++SR+NK
Sbjct: 448 TSENRSNKCNTRENRSNKCNTSESRSNKCNTSESRSNK 485
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T+ N++NK E +C T+ R+N ++SR+NK
Sbjct: 458 TRENRSNKCNTSESRSNKCNTSESRSNKCNTSESRSNK 495
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T N++NK E+ +C T R+N ++SR+NK
Sbjct: 438 TSENRSNKCNTSENRSNKCNTRENRSNKCNTSESRSNK 475
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T N++NK E+ +C T R+N +SR+NK
Sbjct: 338 TSENRSNKCNTRENRSNKCNTRENRSNKCNTRESRSNK 375
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T+ N++NK E+ +C T R+N +++R+NK
Sbjct: 348 TRENRSNKCNTRENRSNKCNTRESRSNKCNTSENRSNK 385
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T N++NK E+ +C T+ R+N ++SR+NK
Sbjct: 388 TGENRSNKCNTRENRSNKCNTSESRSNKCNTSESRSNK 425
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 63 GRCTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
G +N T+ N++NK E +C T+ R+N +++R+NK
Sbjct: 389 GENRSNKCNTRENRSNKCNTSESRSNKCNTSESRSNKCNTSENRSNK 435
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T N++NK E +C T R+N ++SR+NK
Sbjct: 268 TSENRSNKCNTRESRSNKCNTRENRSNKCNTSESRSNK 305
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T+ N++NK E+ +C T R+N ++R+NK
Sbjct: 328 TRENRSNKCNTSENRSNKCNTRENRSNKCNTRENRSNK 365
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T N++NK E+ +C T R+N ++SR+NK
Sbjct: 378 TSENRSNKCNTGENRSNKCNTRENRSNKCNTSESRSNK 415
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T+ N++NK E +C T+ R+N ++R+NK
Sbjct: 358 TRENRSNKCNTRESRSNKCNTSENRSNKCNTGENRSNK 395
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T N++NK E+ +C T+ R+N ++R+NK
Sbjct: 428 TSENRSNKCNTSENRSNKCNTSENRSNKCNTRENRSNK 465
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 78 NTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANKGRAIEWSMSTSARDGC 251
NT ++ NK N + E +C T+ R+N +++R+NK E A + C
Sbjct: 487 NTSESRSNKCNTS---ESRSNKCNTSESRSNKCNTSENRSNKCNTSESPSKIRAENTC 541
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T+ +++NK E+ +C T+ R+N +++R+NK
Sbjct: 278 TRESRSNKCNTRENRSNKCNTSESRSNKCNTSENRSNK 315
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 78 NTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
NT ++ NK N + E +C T+ R+N ++SR+NK
Sbjct: 467 NTSESRSNKCNTS---ESRSNKCNTSESRSNKCNTSESRSNK 505
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 78 NTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
NT ++ NK N + E +C T+ R+N ++SR+NK
Sbjct: 477 NTSESRSNKCNTS---ESRSNKCNTSESRSNKCNTSESRSNK 515
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 78 NTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
NT ++ NK N + E+ +C T R+N + ++R+NK
Sbjct: 297 NTSESRSNKCNTS---ENRSNKCNTRESRSNKCKTRENRSNK 335
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T N++NK E +C T R+N +++R+NK
Sbjct: 308 TSENRSNKCNTRESRSNKCKTRENRSNKCNTSENRSNK 345
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T+ +++NK E+ +C T+ R+N ++R+NK
Sbjct: 318 TRESRSNKCKTRENRSNKCNTSENRSNKCNTRENRSNK 355
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 78 NTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
NT ++ NK N + E+ +C T+ R+N +++R+NK
Sbjct: 417 NTSESRSNKCNTS---ENRSNKCNTSENRSNKCNTSENRSNK 455
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 90 TKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANK 203
T+ +++NK E+ +C T R+N ++R+NK
Sbjct: 368 TRESRSNKCNTSENRSNKCNTGENRSNKCNTRENRSNK 405
>SB_12320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTN---TGRANNGRANKSRANKGR 209
GR+F GR T E T T ++F GR T TGR GR R GR
Sbjct: 34 GREFTGREFTGREFTGREFTGRDFTGREFTGREFTGREFTGREFTGREFTGREFTGR 90
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTN---TGRANNGRANKSRANKGR 209
GR+F GR T E T T + F GR T TGR GR R GR
Sbjct: 64 GREFTGREFTGREFTGREFTGREFTGREFTGREFTGRQFTGRQFTGREFTGREFTGR 120
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTN---TGRANNGRANKSRANKGR 209
GRQF GR T E T T + F GR T TGR GR R GR
Sbjct: 99 GRQFTGRQFTGREFTGREFTGRQFTGRQFTGREFTGREFTGREFVGREFTVREFVGR 155
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/54 (38%), Positives = 22/54 (40%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANKGR 209
GR FVGR T E T + F VGR TGR GR R GR
Sbjct: 239 GRGFVGREFTGREFVGREFTGREFTGREFVGR--EFTGREFTGREFTGREFTGR 290
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANKGR 209
GR+F GR T + T T + F GR TGR GR R GR
Sbjct: 94 GREFTGRQFTGRQFTGREFTGREFTGRQFTGR--QFTGREFTGREFTGREFVGR 145
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTN---TGRANNGRANKSRANKGR 209
GR+F GR T +E T + F VGR TGR GR R GR
Sbjct: 209 GREFTGREFTGSEFTGSEGVGRGFVGRGFVGRGFVGREFTGREFVGREFTGREFTGR 265
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 48 GRQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRA 167
GR+FVGR T E T T + F +GR GRA
Sbjct: 264 GREFVGREFTGREFTGREFTGREFTGREFLGR--EGVGRA 301
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 554 DSTGESN*TYMNSRYKDPAPSRDRGPTKLCARDGGSKGGPEGVWGGERN 408
D GE TY + A +RGP + +R GG +GG G GG R+
Sbjct: 169 DQGGEDRGTYRKPD-QGRADRTERGPPYVSSR-GGGRGGTRGGRGGRRD 215
>SB_754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 72 TTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANKGRAIE 218
TT T GN + ++ + G TTN + NNGR +S N+ RAI+
Sbjct: 37 TTGNGSTPGNGSTTCYKSGN--GSTTTNGSKTNNGR--QSATNRRRAID 81
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 382 KILVCYIILLRSPPQTPSGPPFDPPSLAHSFVGPRSREG 498
+ L Y L + PQ PSG P PS+A + PR G
Sbjct: 280 RFLRAYTPALPTIPQAPSGAPAKTPSVAPAAPSPRPLTG 318
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 382 KILVCYIILLRSPPQTPSGPPFDPPSLAHSFVGPRSREG 498
+ L Y L + PQ PSG P PS+A + PR G
Sbjct: 284 RFLRAYTPALPTIPQAPSGAPAKTPSVAPAAPSPRPLTG 322
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 382 KILVCYIILLRSPPQTPSGPPFDPPSLAHSFVGPRSREG 498
+ L Y L + PQ PSG P PS+A + PR G
Sbjct: 960 RFLRAYTPALPTIPQAPSGAPAKTPSVAPAAPSPRPLTG 998
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYICRL 133
GLC G C G C GLC +C L
Sbjct: 1688 GLCGLGLCGLGLCGLGLCGLGLCGL 1712
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYICRL 133
GLC G C G C GLC +C L
Sbjct: 1693 GLCGLGLCGLGLCGLGLCGLGLCGL 1717
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYICRL 133
GLC G C G C GLC +C L
Sbjct: 1698 GLCGLGLCGLGLCGLGLCGLGLCGL 1722
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYICRL 133
GLC G C G C GLC +C L
Sbjct: 1703 GLCGLGLCGLGLCGLGLCGLGLCGL 1727
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYICRL 133
GLC G C G C GLC +C L
Sbjct: 1708 GLCGLGLCGLGLCGLGLCGLGLCGL 1732
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYICRL 133
GLC G C G C GLC +C L
Sbjct: 1713 GLCGLGLCGLGLCGLGLCGLGLCGL 1737
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYICRL 133
GLC G C G C GLC +C L
Sbjct: 1718 GLCGLGLCGLGLCGLGLCGLGLCGL 1742
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 207 GLCSPGFC*PGHCSRGLCSWYICRL 133
GLC G C G C GLC +C L
Sbjct: 1683 GLCCLGLCGLGLCGLGLCGLGLCGL 1707
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = -3
Query: 258 R*GTRHARTCSSTTRSPGLCSPGFC*PGHC----SRGLCSWYICRLSALP 121
R +R TCS + C G+C GLCS+ CRL P
Sbjct: 897 RQSSRQRETCSKVKKLEAKSKTPDCPEGYCWSQFQVGLCSFKFCRLKHFP 946
>SB_43479| Best HMM Match : GLTT (HMM E-Value=0.66)
Length = 161
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 51 RQFVGRCTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRANKGRAI-EWSM 227
R F C T G T+ + GR T GRA +GRA RA GRA E +
Sbjct: 74 RPFSQCCACIQNATDGRATDGRATD----GRATD--GRATDGRATDGRATDGRATDERAT 127
Query: 228 STSARDG 248
A DG
Sbjct: 128 DGRATDG 134
>SB_48617| Best HMM Match : Drf_FH1 (HMM E-Value=3.7)
Length = 477
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 382 KILVCYIILLRSPPQTPSGPPFDPPSLAHSFVGPRSR 492
+ L Y L + PQ PSG P PS+A + P S+
Sbjct: 182 RFLRAYTPALPTIPQAPSGAPAKTPSMAPAAPSPPSQ 218
>SB_2890| Best HMM Match : rve (HMM E-Value=0.044)
Length = 336
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 382 KILVCYIILLRSPPQTPSGPPFDPPSLAHSFVGPRSR 492
+ L Y L + PQ PSG P PS+A + P S+
Sbjct: 218 RFLRAYTPALPTIPQAPSGAPAKTPSMAPAAPSPPSQ 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,317
Number of Sequences: 59808
Number of extensions: 320780
Number of successful extensions: 1203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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