Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30173
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82064-2|CAI79180.1|  167|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    29   1.8  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    29   1.8  
Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf (tbp-associ...    28   4.2  
Z81453-7|CAB03797.2|  457|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF264764-1|AAQ14296.1|  457|Caenorhabditis elegans sterol reduct...    28   5.6  
Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z82064-2|CAI79180.1|  167|Caenorhabditis elegans Hypothetical
           protein W02B9.2 protein.
          Length = 167

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 518 SRYKDPAPSRDRGPTKLCARDGGSKGGPEGVWGGER 411
           +R+ D AP   RGP     R GG  G   G  GG+R
Sbjct: 67  ARFDDNAPDFPRGPDNNGGRGGGRGGDRGGDRGGDR 102


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 69  CTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRAN 200
           C+T T I    KT K+       G+C  N  R      NK +AN
Sbjct: 107 CSTTTVILSTIKTEKSLSNRGKCGKCGQNFERGEIKAHNKGKAN 150


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 69  CTTNTEITKGNKTNKNFQEEHLVGRCTTNTGRANNGRANKSRAN 200
           C+T T I    KT K+       G+C  N  R      NK +AN
Sbjct: 107 CSTTTVILSTIKTEKSLSNRGKCGKCGQNFERGEIKAHNKGKAN 150


>Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical
           protein F17B5.3 protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 578 VTTAKSYNDSTGE--SN*TYMNSRYKDPAPSRDRGPTKLCARDGGSKGGPEGVW 423
           V ++ SY+ S+ E  S   + NSR    + SR   PT+ C RD  +   P+G W
Sbjct: 35  VGSSSSYSSSSSEERSKRRHKNSRLTHSSRSR---PTRTCPRDWITFERPQGRW 85


>U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 11.1
           protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 143 MYHEHRPREQWPG*QKPGEQRPGDRVVDE 229
           +  +H+P E+ PG  +P   RP  ++ DE
Sbjct: 198 LIQQHQPEEEAPGPSRPAPARPARKLDDE 226


>Z81453-7|CAB03797.2|  457|Caenorhabditis elegans Hypothetical
           protein B0250.9 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 459 PCTQFCRSSVTRGRGIFVPTVHISLIRFP 545
           P T F   S++   G+FVPT+    +RFP
Sbjct: 57  PATFFLFYSISIHTGLFVPTITALFLRFP 85


>AF264764-1|AAQ14296.1|  457|Caenorhabditis elegans sterol reductase
           protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 459 PCTQFCRSSVTRGRGIFVPTVHISLIRFP 545
           P T F   S++   G+FVPT+    +RFP
Sbjct: 57  PATFFLFYSISIHTGLFVPTITALFLRFP 85


>Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical
           protein F38B7.3 protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 527 YMNSRYKDPAPSRDRGPTKLCARDGGSKGGPEGVWGG 417
           Y    Y  PA       T +  RDGG  GG  G +GG
Sbjct: 202 YPQPGYPQPAGVPTSSHTTVIVRDGGYGGGGYGGYGG 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,967,458
Number of Sequences: 27780
Number of extensions: 236522
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)