Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30173
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.95 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.95 
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   5.1  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   5.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 403  ILLRSPPQTPSGPPFD 450
            +++R+ PQ P+GPP +
Sbjct: 997  LIVRTEPQRPAGPPIN 1012


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 403  ILLRSPPQTPSGPPFD 450
            +++R+ PQ P+GPP +
Sbjct: 993  LIVRTEPQRPAGPPIN 1008


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 177 GHCSRGLCSWYICR 136
           GHC +G+C   ICR
Sbjct: 72  GHCEKGVC---ICR 82


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 177 GHCSRGLCSWYICR 136
           GHC +G+C   ICR
Sbjct: 47  GHCEKGVC---ICR 57


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = +3

Query: 138 GRCTTNTGRANNGRANKSRANKG 206
           G   TN    NN   N +  N G
Sbjct: 231 GNANTNASNNNNNNNNNNNNNNG 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,942
Number of Sequences: 438
Number of extensions: 3121
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)