Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30173
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41290.1 68415.m05099 strictosidine synthase family protein s...    31   0.56 
At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein...    30   0.98 
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote...    29   2.3  
At5g08300.1 68418.m00977 succinyl-CoA ligase [GDP-forming] alpha...    28   4.0  

>At2g41290.1 68415.m05099 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088
          Length = 376

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +3

Query: 168 NNGRANKSRANKGRAIEWSMSTSARDGC 251
           ++GR  K  AN+ R I+++++TSAR+GC
Sbjct: 69  SDGRIVKWLANESRWIDFAVTTSAREGC 96


>At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 530

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 147 TTNTGRANNGRANKSRANKGR 209
           +T  GR N GR N+ R N+GR
Sbjct: 504 STTRGRGNRGRGNRGRGNRGR 524



 Score = 30.3 bits (65), Expect = 0.98
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 153 NTGRANNGRANKSRANKGR 209
           N GR N GR N+ R N+GR
Sbjct: 511 NRGRGNRGRGNRGRGNRGR 529


>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
           / Rab GTPase activator family protein similar to
           SP|P26374 Rab proteins geranylgeranyltransferase
           component A 2 (Rab escort protein 2) {Homo sapiens};
           contains Pfam profile PF00996: GDP dissociation
           inhibitor
          Length = 563

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 415 SPPQTPSGPPFDPPSLAHSFV 477
           SPP +PS PP  PPS  H F+
Sbjct: 71  SPPPSPSSPPL-PPSNNHDFI 90


>At5g08300.1 68418.m00977 succinyl-CoA ligase [GDP-forming]
           alpha-chain, mitochondrial, putative / succinyl-CoA
           synthetase, alpha chain, putative / SCS-alpha, putative
           identical to SP|P53586 Succinyl-CoA ligase [GDP-forming]
           alpha-chain, mitochondrial precursor (EC 6.2.1.4)
           (Succinyl-CoA synthetase, alpha chain) (SCS-alpha)
           {Arabidopsis thaliana}; strong similarity to SP|P13086
           Succinyl-CoA ligase [GDP-forming] alpha-chain,
           mitochondrial precursor {Rattus norvegicus}; contains
           Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding
           domain
          Length = 347

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 246 RHARTCSSTTRSPGLCSPGFC*PGHCSRGLCSWYI 142
           +HA    S TR  G   PG   PG C  G+   YI
Sbjct: 158 KHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYI 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,632
Number of Sequences: 28952
Number of extensions: 208745
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)