Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30172
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    24   1.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    24   1.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   1.4  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   1.9  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   2.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.4  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 441 WFGGFLLCTLVFFFRSTG 388
           W+ G  +C ++ FFR  G
Sbjct: 119 WYAGDAMCRIMMFFRMFG 136


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 441 WFGGFLLCTLVFFFRSTG 388
           W+ G  +C ++ FFR  G
Sbjct: 119 WYAGDAMCRIMMFFRMFG 136


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
 Frame = +2

Query: 44  TDKRIQLWHQWPSVMLRKSLT--RQPLMRCKCSEE---TASTPNTQSRN*CGTPRYTKST 208
           T+ RIQ+W       LRK +T    PL+R    E     A   N  + N   TP  T   
Sbjct: 260 TEARIQVWFSNRRARLRKQITSAATPLVRSYAPERYPPLAQGVNDDAFNSVATPTPTSVM 319

Query: 209 KE 214
            E
Sbjct: 320 TE 321


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 139 LRTLAPHQWLPC*RFPKHDTWPLM 68
           ++T  PH++ P  R PK    PL+
Sbjct: 203 IKTSGPHKFQPLLRLPKFKKKPLL 226


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 441 WFGGFLLCTLVFFFRSTG 388
           ++GGFLLC +V + ++ G
Sbjct: 106 FYGGFLLCKVVKYGQTLG 123


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 134 SEETASTPNTQSRN*CGTPRYTKSTKEPRRFKGSSYQE 247
           S    S+P++      G   YTK+ ++   F+GSS  E
Sbjct: 68  SSPRISSPSSTKSGSPGFLTYTKADRDVDLFRGSSTPE 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,517
Number of Sequences: 336
Number of extensions: 3982
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)