Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30172
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   2.7  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   4.8  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   6.3  

>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 629 CVIHRVRGNELPYGNIVSVRQKQFLYIQTFMI*FLLKR 516
           C I R+RG  LP+ +I S R+  F  +    I  LL++
Sbjct: 297 CEICRLRGTALPFRDIYSGRESSFYDLHNRKIMSLLRQ 334


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 71  QWPSVMLRKSLTRQPLMRCKCSEETA 148
           +W +++ +++LT + L+  KC  ETA
Sbjct: 616 KWKTIIYKENLTAENLLYPKCPNETA 641


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -3

Query: 552 HSNIHDLVFIKTGCIDKKSHYTCNNVIIFNMRNVYLVWFGGFLLCTLVFFFRSTGRLFLY 373
           HS++   VF+  G +D+ + Y  N+ +  N RN+  ++   +LL  L     S   L   
Sbjct: 252 HSDVIISVFVNKGLVDQAAAYLKNSNL--NERNLPTIYTTVWLLQRLFEAHHSLDPLLTI 309

Query: 372 MK*YNRVQPMAPSHYTPNIIIL 307
              Y  V P   +  T  I+ L
Sbjct: 310 FDYYLSVSPKDITRLTNAILSL 331


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 193  IYQIYEGTSQIQRLIISREILPQQLKPTDVLTKVA*LLKYNNIGCVM 333
            + Q+ EG + I     S+ IL + +KP ++L     ++KY++ G  +
Sbjct: 1142 VVQLLEGLAYIH----SQHILHRDIKPANILLDHRGMIKYSDFGSAL 1184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,698
Number of Sequences: 5004
Number of extensions: 66037
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)