Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30172
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   1e-32
SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   8e-10
SB_48362| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=9.4e-08)         54   9e-08
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_39470| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_20822| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_38710| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-09)                 28   8.9  
SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092)                28   8.9  

>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score =  137 bits (331), Expect = 1e-32
 Identities = 60/85 (70%), Positives = 74/85 (87%)
 Frame = +1

Query: 1   TARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLM 180
           TAR+A QR+AW +D G++NT  AS+AKC A ++ANK ATDAVQ+FGGNGFN EYPVEKLM
Sbjct: 409 TARLATQRSAWEIDQGRRNTYYASIAKCLAGDVANKCATDAVQIFGGNGFNQEYPVEKLM 468

Query: 181 RDAKIYQIYEGTSQIQRLIISREIL 255
           RDAKI+QIYEGT+QIQR+II R ++
Sbjct: 469 RDAKIFQIYEGTAQIQRMIIGRSLI 493


>SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 40/114 (35%), Positives = 60/114 (52%)
 Frame = +1

Query: 1   TARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLM 180
           T  +A+  +A M        V A+++K  ASE A   A + +Q+ GG GF     VE++M
Sbjct: 272 TESMAYMISANMDSGATDFQVEAAISKVFASEAAWFVADECIQILGGTGFMKSAGVERVM 331

Query: 181 RDAKIYQIYEGTSQIQRLIISREILPQQLKPTDVLTKVA*LLKYNNIGCVMGWG 342
           RD +I++I+EGT+ I RL+I+   L    K    L K        NIG +M +G
Sbjct: 332 RDLRIFRIFEGTNDILRLMIALTGLQGAGKRLQALQKQL-KNPVGNIGALMDFG 384


>SB_48362| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=9.4e-08)
          Length = 100

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 26/76 (34%), Positives = 51/76 (67%)
 Frame = +1

Query: 37  VDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGT 216
           ++ GQ     AS++K  ++++A+    DA+Q+ GG G+  EYP+ +L+RD+++  I  GT
Sbjct: 19  LNDGQYVVKEASMSKLLSTKMADSVIYDALQLLGGYGYMEEYPLARLLRDSRLGPIGGGT 78

Query: 217 SQIQRLIISREILPQQ 264
           S+I + II++ I+ ++
Sbjct: 79  SEILKEIIAKMIIDKK 94


>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 21/46 (45%), Positives = 32/46 (69%)
 Frame = +1

Query: 85  HASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQ 222
           + +E A + A DA+Q  GGNG+  +YP  + +RDAK+Y+I  GTS+
Sbjct: 352 YTAENATQVALDAIQCLGGNGYINDYPTGRFLRDAKLYEIGAGTSE 397


>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = +1

Query: 4   ARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMR 183
           AR+    AA   + G       ++AK  ASE+A    +  ++  GG GF   YP+EK  R
Sbjct: 347 ARLLVYNAARRKEAGLPVVREGAMAKYFASEVATLTTSKCMEWMGGVGFTKSYPIEKYYR 406

Query: 184 DAKI 195
           D KI
Sbjct: 407 DCKI 410


>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +1

Query: 55  NTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRL 234
           + ++AS+ K  A  +  +     +Q +GG GF ++  V +  RD ++  I  G  ++   
Sbjct: 567 SNLLASMLKLKAGRLVREVTDSCLQFWGGMGFTSDVEVSRAYRDNRLLSIGGGADEVMLS 626

Query: 235 IISRE 249
           II+++
Sbjct: 627 IIAKK 631


>SB_39470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/75 (21%), Positives = 39/75 (52%)
 Frame = +1

Query: 61  VMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLII 240
           ++  +AK + ++ A   A++ ++ FGG G+  +  +  L+RDA++   ++    +   + 
Sbjct: 79  LLTPIAKLYTAKQAIYVASEGLESFGGQGYIEDTGLPGLLRDAQVLHAFQ--ESVHSKLK 136

Query: 241 SREILPQQLKPTDVL 285
           + + LP      DV+
Sbjct: 137 AADSLPSLRSSCDVI 151


>SB_20822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 121 AVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISR 246
           A  + GGNG + E+ V + + + +    YEGT  +  LI+ R
Sbjct: 1   ARDMHGGNGVSDEFHVIRHVMNLEAVNTYEGTHDVHALILGR 42


>SB_38710| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-09)
          Length = 435

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 53  RIQLW-HQWPSVMLRKSLTRQPLMRCKCSEETASTPNTQSRN*C 181
           R  +W H+WPSV+ R+       MR   S ET STP     + C
Sbjct: 390 RTYIWNHRWPSVLARQR------MRPLTSAETGSTPGRDIDSSC 427


>SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092)
          Length = 565

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 225 NLRGSFVDLVYLGVPHQFLD--WVFGVEAVSSEHLHRISGC 109
           N   SF DL+ +GV    +D  W FG   +S  H H   GC
Sbjct: 242 NQEFSFTDLLDMGVRALEIDPWWCFGKIRMSHAHDHAYLGC 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,931,288
Number of Sequences: 59808
Number of extensions: 473242
Number of successful extensions: 992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)