Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30172
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    64   9e-11
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    43   2e-04
At1g62530.1 68414.m07055 hypothetical protein                          31   0.59 
At3g20680.1 68416.m02617 expressed protein                             29   2.4  
At4g37950.1 68417.m05365 expressed protein                             29   4.2  
At5g53520.1 68418.m06651 oligopeptide transporter OPT family pro...    27   9.6  
At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR...    27   9.6  
At3g21630.1 68416.m02728 protein kinase family protein contains ...    27   9.6  
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR...    27   9.6  

>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 27/59 (45%), Positives = 42/59 (71%)
 Frame = +1

Query: 88  ASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREILPQQ 264
           A+E A + A  A+Q  GGNG+  EY   +L+RDAK+Y+I  GTS+I+R++I RE+  ++
Sbjct: 351 AAERATQVALQAIQCLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRIVIGRELFKEE 409


>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 25/81 (30%), Positives = 38/81 (46%)
 Frame = +1

Query: 10  IAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDA 189
           + W R   + + GQ     AS+ K   S  A + A+   ++ GGNG   ++ V K   D 
Sbjct: 343 MGW-RLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDL 401

Query: 190 KIYQIYEGTSQIQRLIISREI 252
           +    YEGT  I  L+  RE+
Sbjct: 402 EPIYTYEGTYDINTLVTGREV 422


>At1g62530.1 68414.m07055 hypothetical protein
          Length = 282

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 366 ISYIETVFQSNEKKKQEYTTKNPQTKPNI 452
           I+ +ETVF+S + KK +  TK+ + KPN+
Sbjct: 238 INLLETVFRSRDYKKMQGKTKDGKCKPNL 266


>At3g20680.1 68416.m02617 expressed protein
          Length = 338

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -3

Query: 240 YDEPLNLRGSFVDLVYLGVPHQFLDWVFGVEAVSSEHLHRISGCLVSD 97
           +D P++ RGS V L++L     F+D    V+A  S+ +H I+   VSD
Sbjct: 137 HDLPISRRGSNVKLLFLWPNPSFID--PAVKAFRSDSIHHIAMSPVSD 182


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 20  NAPHGWLTTDKRIQLWHQWPS 82
           N  HGW+++D+RI  W   PS
Sbjct: 257 NKVHGWISSDQRIGFWMITPS 277


>At5g53520.1 68418.m06651 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 733

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 477 VIIFNMRNVYLVWFGGFLLCTLVFFF 400
           + I+    + L W+G FL C +  FF
Sbjct: 430 ICIYYKTQIQLPWWGAFLACLIAIFF 455


>At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 148 FNTEYPVEKLMRDAKIYQIYEGTSQIQRL 234
           F  E+ VE  MRD+K+ +++EG   ++ L
Sbjct: 611 FRPEFLVELTMRDSKLEKLWEGIQPLKSL 639


>At3g21630.1 68416.m02728 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 617

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 38  LTTDKRIQLWHQWPSVMLRKSLTRQPLMRCKCSEETAS 151
           LTT + +Q  + +P+  +  S T   L+ C C +E+ S
Sbjct: 124 LTTMESLQARNPFPATNIPLSATLNVLVNCSCGDESVS 161


>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1036

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 142 NGFNTEYPVEKLMRDAKIYQIYEGTSQIQRL 234
           + F TEY VE  MR +K+++++EG   +  L
Sbjct: 628 SNFCTEYLVELNMRFSKLHKLWEGNRPLANL 658


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,382
Number of Sequences: 28952
Number of extensions: 329982
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)