Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30171
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q99623 Cluster: Prohibitin-2; n=56; Eukaryota|Rep: Proh...    60   4e-08
UniRef50_Q4SY17 Cluster: Chromosome undetermined SCAF12238, whol...    60   5e-08
UniRef50_Q00WC8 Cluster: Prohibitin 1-like protein; n=1; Ostreoc...    43   0.006
UniRef50_Q4DEQ3 Cluster: Prohibitin, putative; n=6; Trypanosomat...    36   1.2  
UniRef50_O49460 Cluster: Prohibitin-like protein; n=19; Viridipl...    35   2.1  
UniRef50_UPI0000EB0A5B Cluster: UPI0000EB0A5B related cluster; n...    33   6.4  

>UniRef50_Q99623 Cluster: Prohibitin-2; n=56; Eukaryota|Rep:
           Prohibitin-2 - Homo sapiens (Human)
          Length = 299

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 34/82 (41%), Positives = 42/82 (51%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +TELSF +EYT                     +AKQE++QKIVQ                
Sbjct: 184 ITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALS 243

Query: 182 XNPGYLKLRKIRAAQSISRMIA 247
            NPGY+KLRKIRAAQ+IS+ IA
Sbjct: 244 KNPGYIKLRKIRAAQNISKTIA 265


>UniRef50_Q4SY17 Cluster: Chromosome undetermined SCAF12238, whole
           genome shotgun sequence; n=5; Euteleostomi|Rep:
           Chromosome undetermined SCAF12238, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 328

 Score = 60.1 bits (139), Expect = 5e-08
 Identities = 32/83 (38%), Positives = 43/83 (51%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +TELSF +EYT                     +AKQ+++QKI+Q                
Sbjct: 219 ITELSFSREYTAAVEAKQVAQQEAQRAQFYVEKAKQDQKQKIIQAEGEAQAAKMLGEAVT 278

Query: 182 XNPGYLKLRKIRAAQSISRMIAQ 250
            NPGYLKLRKIRAAQ+I++ +AQ
Sbjct: 279 KNPGYLKLRKIRAAQNIAKTVAQ 301


>UniRef50_Q00WC8 Cluster: Prohibitin 1-like protein; n=1;
           Ostreococcus tauri|Rep: Prohibitin 1-like protein -
           Ostreococcus tauri
          Length = 306

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           LT L+FG+EYT                     RAKQE+   ++Q                
Sbjct: 199 LTALTFGREYTAAIESKQVAQQEAERAKFVVERAKQEKLSAVIQAEGEAKSAKLIGEAIA 258

Query: 182 XNPGYLKLRKIRAAQSISRMIA 247
            NP +L LRKI AA++I++ +A
Sbjct: 259 NNPAFLTLRKIEAARAIAQTMA 280


>UniRef50_Q4DEQ3 Cluster: Prohibitin, putative; n=6;
           Trypanosomatidae|Rep: Prohibitin, putative - Trypanosoma
           cruzi
          Length = 306

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T++SFGKEYT                     +A+QE++  I+                 
Sbjct: 191 ITQMSFGKEYTSAVEAKQVAQQMAERAKWRVEQAEQEKKGAILLAEGEAEAAKLIGDAVQ 250

Query: 182 XNPGYLKLRKIRAAQSISRMI 244
            NP ++ LR + A+++I++M+
Sbjct: 251 KNPAFITLRSLEASRAIAKMM 271


>UniRef50_O49460 Cluster: Prohibitin-like protein; n=19;
           Viridiplantae|Rep: Prohibitin-like protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 288

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T L+FGKE+T                     +A+Q+++  +++                
Sbjct: 179 ITNLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIA 238

Query: 182 XNPGYLKLRKIRAAQSISRMIA 247
            N  ++ LRKI AA+ I++ IA
Sbjct: 239 NNQAFITLRKIEAAREIAQTIA 260


>UniRef50_UPI0000EB0A5B Cluster: UPI0000EB0A5B related cluster; n=1;
           Canis lupus familiaris|Rep: UPI0000EB0A5B UniRef100
           entry - Canis familiaris
          Length = 69

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 185 NPGYLKLRKIRAAQSISRMIA 247
           NPGYLKL KI+ AQ+IS+ +A
Sbjct: 15  NPGYLKLYKIKTAQNISKTMA 35


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,729,851
Number of Sequences: 1657284
Number of extensions: 8493762
Number of successful extensions: 16493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16485
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)