Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30171
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    31   0.15 
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    26   4.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   5.8  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 18/83 (21%), Positives = 33/83 (39%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           LT + F  E+T                     RA+ E+Q  IV+                
Sbjct: 179 LTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEKQGFIVRAQGEGRAAQLIGEAIK 238

Query: 182 XNPGYLKLRKIRAAQSISRMIAQ 250
             PG+++LRK+  A+ I+ ++++
Sbjct: 239 NKPGFIELRKLETAREIANILSK 261


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 475 YLGCSANHNSNILNLC 522
           YL  +  HN NILNLC
Sbjct: 143 YLADTLRHNQNILNLC 158


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 217 CCSKYFENDCSISNRVFLPGNSLMIN 294
           CC+KYF N  S  N +  P  +L+++
Sbjct: 10  CCAKYFVNTKSRFNEILPPRFTLIVS 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,478
Number of Sequences: 5004
Number of extensions: 37359
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)