Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30171
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702...    38   0.006
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925...    37   0.013

>03_06_0626 -
           35169352-35169546,35169736-35169948,35170102-35170272,
           35170826-35170942,35171078-35171233
          Length = 283

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T LSFGKE+T                     +A+Q+++  I++                
Sbjct: 174 ITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGEAKSAQLIGEAIN 233

Query: 182 XNPGYLKLRKIRAAQSISRMIA 247
            NP +L LR+I AA+ IS  +A
Sbjct: 234 NNPAFLALRQIEAAREISHTMA 255


>07_01_1055 -
           9253936-9254130,9254271-9254483,9254588-9254758,
           9255743-9255859,9257021-9257186,9258885-9258934,
           9259095-9259268
          Length = 361

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T LSFGKE+T                     +A+Q+++  I++                
Sbjct: 252 ITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGEAKSAELIGQAIA 311

Query: 182 XNPGYLKLRKIRAAQSISRMIA 247
            NP +L LR+I AA+ IS  ++
Sbjct: 312 NNPAFLALRQIEAAREISHTMS 333



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 247 SISNRVFLPGNSLMINLQDPTFDDLSEK 330
           S +N+VFL  N L++NLQ  T  + S+K
Sbjct: 334 SSANKVFLDSNDLLLNLQQLTVANKSKK 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,337
Number of Sequences: 37544
Number of extensions: 232780
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)