Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30171
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03860.3 68414.m00370 prohibitin, putative similar to SP|P241...    38   0.008
At1g03860.2 68414.m00368 prohibitin, putative similar to SP|P241...    38   0.008
At1g03860.1 68414.m00369 prohibitin, putative similar to SP|P241...    38   0.008
At5g44140.1 68418.m05402 prohibitin, putative similar to SP|P241...    35   0.043
At4g28510.1 68417.m04078 prohibitin, putative similar to SP|P241...    35   0.057
At5g61720.1 68418.m07744 expressed protein predicted protein, Ar...    27   8.6  

>At1g03860.3 68414.m00370 prohibitin, putative similar to SP|P24142
           Prohibitin (B-cell receptor associated protein 32) (BAP
           32) {Rattus norvegicus}; contains Pfam profile PF01145:
           SPFH domain / Band 7 family
          Length = 286

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T L+FGKE+T                     +A+Q+R+  +++                
Sbjct: 179 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIA 238

Query: 182 XNPGYLKLRKIRAAQSISRMIAQ 250
            N  ++ LRKI AA+ I++ IAQ
Sbjct: 239 NNQAFITLRKIEAAREIAQTIAQ 261


>At1g03860.2 68414.m00368 prohibitin, putative similar to SP|P24142
           Prohibitin (B-cell receptor associated protein 32) (BAP
           32) {Rattus norvegicus}; contains Pfam profile PF01145:
           SPFH domain / Band 7 family
          Length = 221

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T L+FGKE+T                     +A+Q+R+  +++                
Sbjct: 114 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIA 173

Query: 182 XNPGYLKLRKIRAAQSISRMIAQ 250
            N  ++ LRKI AA+ I++ IAQ
Sbjct: 174 NNQAFITLRKIEAAREIAQTIAQ 196


>At1g03860.1 68414.m00369 prohibitin, putative similar to SP|P24142
           Prohibitin (B-cell receptor associated protein 32) (BAP
           32) {Rattus norvegicus}; contains Pfam profile PF01145:
           SPFH domain / Band 7 family
          Length = 286

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T L+FGKE+T                     +A+Q+R+  +++                
Sbjct: 179 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIA 238

Query: 182 XNPGYLKLRKIRAAQSISRMIAQ 250
            N  ++ LRKI AA+ I++ IAQ
Sbjct: 239 NNQAFITLRKIEAAREIAQTIAQ 261


>At5g44140.1 68418.m05402 prohibitin, putative similar to SP|P24142
           Prohibitin (B-cell receptor associated protein 32) (BAP
           32) {Rattus norvegicus}; contains Pfam profile PF01145:
           SPFH domain / Band 7 family; non-consensus TT acceptor
           splice site at exon 2
          Length = 278

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 20/83 (24%), Positives = 35/83 (42%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T L FGKE+T                     +A+Q+++  I++                
Sbjct: 179 ITNLKFGKEFTEAIEKKQVAAQEAERAKFIVEKAEQDKKSAIIRAQGEAKSAQLIGQAIA 238

Query: 182 XNPGYLKLRKIRAAQSISRMIAQ 250
            N  ++ LRKI AA+ I++ IA+
Sbjct: 239 NNEAFITLRKIEAAREIAQTIAK 261


>At4g28510.1 68417.m04078 prohibitin, putative similar to SP|P24142
           Prohibitin (B-cell receptor associated protein 32) (BAP
           32) {Rattus norvegicus}; contains Pfam profile PF01145:
           SPFH domain / Band 7 family
          Length = 288

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +2

Query: 2   LTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXXXXXXXX 181
           +T L+FGKE+T                     +A+Q+++  +++                
Sbjct: 179 ITNLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIA 238

Query: 182 XNPGYLKLRKIRAAQSISRMIA 247
            N  ++ LRKI AA+ I++ IA
Sbjct: 239 NNQAFITLRKIEAAREIAQTIA 260


>At5g61720.1 68418.m07744 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 390

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -3

Query: 440 KNFFLKLETVISSFR-VAAGFRFSAHTLSASCYFFLVSF-SDKSSKVGS*RLIIRLFPGR 267
           K+FF+KLE  ++ F+ V+   +F     S   +  ++S    K   V S R++  +    
Sbjct: 250 KDFFVKLEDYMACFKLVSPESKFEMAVKSDKLFTAMISLDGTKGGSVDSWRMLDGMLSMG 309

Query: 266 KTRFEIEQSFSK--YFEQ 219
           K   +I++S SK   FEQ
Sbjct: 310 KVLVDIKKSGSKEITFEQ 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,719,918
Number of Sequences: 28952
Number of extensions: 195193
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)