Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30170
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   1.8  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   2.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   2.4  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   3.1  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   3.1  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.1  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   5.5  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    26   5.5  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   7.2  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    25   9.5  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   9.5  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 57   LNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVK----VIVEEIKPSLKSDLEN 224
            +  V+      ELID+A    DI   +   +   +D  V+    ++ +E++ + + D+E 
Sbjct: 867  IGFVEKPDKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEK 926

Query: 225  VEVPDENE 248
             E+ D  E
Sbjct: 927  DELEDIKE 934


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 22/105 (20%), Positives = 52/105 (49%)
 Frame = +3

Query: 30  KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 209
           K P +E  P   V  L+ +   I    +I +++ +  ++  +V++ P + ++ +I+ +  
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435

Query: 210 SDLENVEVPDENEEIRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 344
           +   NV    + E+   L      P PR++ +T+H+I +  ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +3

Query: 78  SSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLEN 224
           S+ +EL+D+    KD+    +A K EV+D+ VK   E+++   KS+ E+
Sbjct: 465 STYKELMDRVQN-KDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQEH 512


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 257 RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 385
           +P  D RN GP Q  + + + PE H ++  E+ +  + ++ N  E
Sbjct: 151 KPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 290 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 376
           P +++  T++ E HED +  V  +++D N
Sbjct: 24  PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 279 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 386
           +P P S+    HR LN  K+    F P  +  T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
 Frame = +3

Query: 60  NVVDNLSSEQE--------LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEI 194
           NVVD+LS EQE        L DQ N   +  NSLR+       +P  + V++I
Sbjct: 137 NVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSG-----SVPFTITVDDI 184


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 282 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVIFGGG 440
           P   +  + K  I   +K++  + LP+ +T  Q K LFVK+   C+ V    G
Sbjct: 39  PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRVSLAYG 90


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 4/149 (2%)
 Frame = +3

Query: 84  EQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKP-SLKSDLENVEVPDENEEI-- 254
           ++E   Q    +  +   RA ++E   +  +   +E +  + +  LE   +P   EEI  
Sbjct: 229 QREYDTQLRAFRTYEREQRAKRQEQFRLERENREKEKRRIAAQRKLEEASIPAFTEEILA 288

Query: 255 -RGL*SI*EIPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVIF 431
              L  +  +P   S  +       ++K+LK   L  +      +   +K        +F
Sbjct: 289 CENLLKVFHVPVESSTTNAVSTGNTSSKILKPRTLTPRTVDPIPEGTIIK-KESSDDAMF 347

Query: 432 GGGKKPKMSSSEQINELQASLQHFQEIFG 518
            G KK K   S + N  QA        FG
Sbjct: 348 SGLKKSKPKKSNKSNNNQADSDRLNLSFG 376


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 150 KEVIDIPVKVIVEEIKPSLKSDLEN 224
           K V+DI   + ++EIKP+++  L N
Sbjct: 90  KYVVDISPDIDIKEIKPNIRVALRN 114


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 138 RANKKEVIDIPVKVIVEEIKPSLKSDLENVE 230
           + N + VI+IPV+ I   +K + K  ++NVE
Sbjct: 540 KQNLEPVINIPVEEIDFPMKVATKESMKNVE 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,331
Number of Sequences: 5004
Number of extensions: 50116
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)