Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30170
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 31 0.61
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.80
01_04_0107 + 16086724-16086799,16088007-16088288,16088523-160885... 30 1.4
12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316... 29 2.4
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047... 29 2.4
02_01_0608 + 4557017-4557265 29 3.2
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 4.3
01_01_0100 - 755894-756662,757086-757598,758718-761050 29 4.3
09_04_0086 + 14445665-14446683,14448669-14448915 28 5.6
09_04_0085 + 14441123-14443507,14443731-14443787 28 5.6
08_02_0003 + 11180421-11180757,11180773-11185715 28 5.6
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 28 5.6
07_01_0376 + 2815419-2815755,2815912-2817659 28 5.6
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493... 28 5.6
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 7.5
10_06_0117 - 10948723-10948774,10949169-10949286,10949350-109494... 28 7.5
07_03_1325 + 25830838-25831440 28 7.5
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 28 7.5
03_01_0055 + 466834-467147,467521-467590,467669-467713,467801-46... 28 7.5
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 27 9.9
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 27 9.9
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 269 DLRNPGPPQHQEHETQNPEHH-EDAEKIVSSVKNDINTAEIALRQGFQEVSDGNFWGGKK 445
DL P QEHE Q +HH D K S +T +A ++ + N GK+
Sbjct: 420 DLTELCEPDMQEHEEQVTQHHGADETKTSSDAPTMTSTETMASTPAIRKSTSANKLQGKR 479
Query: 446 TKNVVVRAN 472
+++ +N
Sbjct: 480 PPRLLISSN 488
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 257 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 346
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>01_04_0107 +
16086724-16086799,16088007-16088288,16088523-16088585,
16088684-16089045
Length = 260
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +3
Query: 6 RTRSSIPDKVPEAEDKPLNVVDNLSS----EQELIDQANT-IKDIDNSLRANKKEVIDIP 170
R+++S+ + +P++ KP+ V +SS E L D A+ +K+ D+ + D+P
Sbjct: 172 RSKNSLAELIPDS--KPIEEVLAISSFEFPESLLKDDASAFVKEEDDPREVIELPKTDLP 229
Query: 171 VKVIVEEIKPSL 206
+ +VE KPSL
Sbjct: 230 SQPLVEPFKPSL 241
>12_02_0772 -
23029703-23029715,23029835-23030463,23030637-23031673,
23031830-23032166
Length = 671
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 30 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 161
++ +DK L+ +D + E ID+ I ++D L +K+ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQKDTL 53
>03_05_0952 +
29103879-29103983,29104103-29104600,29104693-29104794,
29105552-29105898,29105967-29106153,29106242-29106417,
29106976-29107065,29107066-29107322,29107593-29107687,
29107801-29107920,29108111-29108230,29108410-29108508,
29108588-29108689,29108884-29109111
Length = 841
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 15 SSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIK-DIDNSLRANKKEVIDIPVKVIVEE 191
S I D + E EDK E+E +A + D + R NK + + ++ E
Sbjct: 132 SLITDAMKEEEDKLHEARVKADEEEEARKRAEAARLAFDPNARFNKLDELLTQTQLYSEF 191
Query: 192 IKPSLKS--DLENVEVPDENEEI 254
+ +++ D+E V+ PDE E +
Sbjct: 192 LLEKMETIADVEGVDTPDEEEPV 214
>02_01_0608 + 4557017-4557265
Length = 82
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 585 GAADGVSWFNKNVAFHSTLVSERRKFLGNVASWPGAR---*FARTTTFLVFFP 436
G A +W ++ +H + ERR+++ ++WP R F R + FFP
Sbjct: 19 GEAMAPNWDFGSIIWHFAICDERRRWMMGRSNWPCLRADGLFLRGVVVVAFFP 71
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 30 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 161
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 30 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 161
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>09_04_0086 + 14445665-14446683,14448669-14448915
Length = 421
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 30 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 161
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 351 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 394
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 30 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 161
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 30 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 161
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 30 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 161
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>07_01_0376 + 2815419-2815755,2815912-2817659
Length = 694
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 30 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 161
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>06_03_0056 -
16046535-16047309,16047625-16048784,16049233-16049340,
16049487-16049672,16050342-16050398
Length = 761
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 573 GVSWFNKNVAFHSTLVSERRKFLGNVAS 490
G+SW N N HS++ SE L V+S
Sbjct: 10 GISWRNSNPKVHSSMCSELTMMLDKVSS 37
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +3
Query: 3 RRTRSSIPDKVPEAEDKPLNVVD-NLSSE---QELIDQANTIKDIDNSLR 140
++T+ ++ + V E + + N+ + N SSE QEL D+ N++KD N L+
Sbjct: 379 KQTKVNLENAVSELKKEVENLTEQNRSSELLIQELRDEINSLKDSKNELQ 428
>10_06_0117 -
10948723-10948774,10949169-10949286,10949350-10949421,
10949772-10949866,10950183-10950322
Length = 158
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 412 SVRR*FLGGEKNQKCRRPSKLTSSR--PACNISKK 510
S+RR F GG+ + +RPS + S+R PA KK
Sbjct: 29 SIRRSFQGGDPSVSSKRPSNVESNRKGPAGTSKKK 63
>07_03_1325 + 25830838-25831440
Length = 200
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 3 RRTRSSIPDKVPEAEDKPLNVVDNLSSEQE 92
+R +I K PE K N+V++LS E+E
Sbjct: 158 KRVADTIKGKTPEEIRKEFNIVNDLSKEEE 187
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 296 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVS--DGNF 430
H+ + Q + H EDAEK+V SVK + E G +V GNF
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNF 201
>03_01_0055 +
466834-467147,467521-467590,467669-467713,467801-467869,
468006-468059,469010-469120,469225-469358,469438-469477,
469790-469849,469934-470115,470290-470785
Length = 524
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 57 KVYLRPRGPCPGWSCACGE 1
+V L+ PCPGWSC+ E
Sbjct: 271 RVVLQCDLPCPGWSCSADE 289
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +3
Query: 27 DKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSL 206
DK+P+ + ++ N++S + +A D D L KK+ D+P +V+ E
Sbjct: 897 DKIPQPLENAISD-SNMTSVFSGVPEAENA-DTDKGLFLAKKDSEDMPKEVVGAEGSQQD 954
Query: 207 KSDLENVEVPDENEEI 254
+ EV DE+ E+
Sbjct: 955 QFTTSTHEVVDEHNEV 970
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = +3
Query: 33 VPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKS 212
+ A+ K L++ + S EQEL +++ D+ L+AN + + +K +EE+K +
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELKRQ-RD 728
Query: 213 DLENVE 230
+L+ +E
Sbjct: 729 NLKTLE 734
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,777,159
Number of Sequences: 37544
Number of extensions: 334871
Number of successful extensions: 1134
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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