Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30170
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    30   1.9  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      29   2.5  
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)             29   3.3  
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     29   3.3  
SB_26272| Best HMM Match : DDE (HMM E-Value=5.7e-33)                   29   4.4  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.8  
SB_57827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_51421| Best HMM Match : VWA (HMM E-Value=3.5e-27)                   28   7.6  
SB_30490| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_15638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         28   7.6  
SB_34214| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)            28   7.6  
SB_32642| Best HMM Match : IL10 (HMM E-Value=2.5)                      28   7.6  
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)            28   7.6  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   28   7.6  
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_2239| Best HMM Match : WXG100 (HMM E-Value=2.8)                     28   7.6  

>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 60   NVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPD 239
            +VVD++   Q ++DQ N +K     L   +  VI +PVK +     P     + N+ V D
Sbjct: 838  SVVDDMIG-QFVVDQGNVLKVGRVVLDFEQATVISVPVKCVDSGYPPLSLQVVFNITVDD 896

Query: 240  ENE 248
             NE
Sbjct: 897  VNE 899


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 433  GGEKNQKCRRPSKLTSSRPACNISKKFSALRYQS*MKRYIFIKPADTIGG 582
            GG  N+  R+P    S+RP+ +++   S L+  S +++ I   P    GG
Sbjct: 1357 GGAMNESRRKPESTLSNRPSFSVTAFGSPLQTNSPVRKQIRPTPVAASGG 1406


>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
          Length = 149

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 12  RSSIPDKVPEAEDKPLNVVDNLSSEQELIDQ-ANTIKDIDNSLRANKKEVIDIPVKVIVE 188
           + SIP   P+ + K LN V+N++  +E  ++ A+ + D+ N + + K E     V   V+
Sbjct: 72  KDSIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVK 130

Query: 189 EIK 197
            +K
Sbjct: 131 SLK 133


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +3

Query: 75   LSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEEI 254
            L  + E + + N +   DN+ ++ + + +++ +K + E I   L+ +LEN    D  EE+
Sbjct: 1261 LQEQVENLIKDNALLQKDNTDKSTEIQNMELEIKRL-ENIVSDLQKELENRPDDDWKEEV 1319

Query: 255  RGL*SI*E--IPGPRSIKSTKHRILNTTKMLKKSFLPSK 365
             GL S  E  +    S+K     I + ++  K++ +  K
Sbjct: 1320 DGLKSRNEELLKEVESLKENLKEIKDGSQTEKENLIEEK 1358


>SB_26272| Best HMM Match : DDE (HMM E-Value=5.7e-33)
          Length = 312

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +3

Query: 39  EAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKV-IVEEIKPSLKSD 215
           E ED P    D L + QEL+++ +   D    L +N++E+    V+  + ++I+  + +D
Sbjct: 205 EEEDDPFEGEDELPALQELLNKVDGSCDASTFL-SNEEEIPRTYVRTYMTKQIQCQVGAD 263

Query: 216 LENVEVPDENEEIR 257
           ++ V   D++ E++
Sbjct: 264 VQVVGDDDDDPELK 277


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +3

Query: 27  DKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSL 206
           +KV E+ D  +  ++N     EL +Q   IK+ +  L+  +KE+  +  K+I  E+   L
Sbjct: 603 EKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKKII--ELSDKL 655

Query: 207 KSDLE 221
           K D+E
Sbjct: 656 K-DME 659


>SB_57827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 51  KPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVE 230
           KP+      SS  +L D+   + +++     NK   +++  K ++EE+K   +++ E +E
Sbjct: 9   KPIEHRGVFSSISKLRDEYEDV-NLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIE 67

Query: 231 VPDE-NEEIRGL 263
           V +  NEE++ L
Sbjct: 68  VLEALNEELKSL 79


>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 75  LSSEQELIDQA-NTIKDIDNSLRANKKEVIDIPV--KVIVEEIKPSLKSDLENVEVPDE- 242
           LS E E I +  +  +D++  L+  K +  D+ +  K ++EE+K   +++ E +EV +  
Sbjct: 132 LSKELESISKLRDEYEDVNLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEAL 191

Query: 243 NEEIR 257
           NEE++
Sbjct: 192 NEELK 196


>SB_51421| Best HMM Match : VWA (HMM E-Value=3.5e-27)
          Length = 576

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 330 TKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVIFGGGKKPKMS 458
           T+  KK   P    L + + LF K+SRK + V+F G +K + S
Sbjct: 401 TRPGKKPKKPKAPALYRVRKLFNKSSRKTKVVVFLGTRKYRES 443


>SB_30490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 75  LSSEQELIDQA-NTIKDIDNSLRANKKEVIDIPV--KVIVEEIKPSLKSDLENVEVPDE- 242
           LS E E I +  +  +D++  L+  K +  D+ +  K ++EE+K   +++ E +EV +  
Sbjct: 132 LSKELESISKLRDEYEDVNLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEAL 191

Query: 243 NEEIR 257
           NEE++
Sbjct: 192 NEELK 196


>SB_15638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 75  LSSEQELIDQA-NTIKDIDNSLRANKKEVIDIPV--KVIVEEIKPSLKSDLENVEVPDE- 242
           LS E E I +  +  +D++  L+  K +  D+ +  K ++EE+K   +++ E +EV +  
Sbjct: 132 LSKELESISKLRDEYEDVNLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEAL 191

Query: 243 NEEIR 257
           NEE++
Sbjct: 192 NEELK 196


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 450 KMSSSEQINELQASLQHFQE 509
           K S SEQI+ L+A+LQH QE
Sbjct: 326 KSSFSEQISTLEAALQHEQE 345


>SB_34214| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
          Length = 214

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 75  LSSEQELIDQA-NTIKDIDNSLRANKKEVIDIPV--KVIVEEIKPSLKSDLENVEVPDE- 242
           LS E E I +  +  +D++  L+  K +  D+ +  K ++EE+K   +++ E +EV +  
Sbjct: 53  LSKELESISKLRDEYEDVNLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEAL 112

Query: 243 NEEIR 257
           NEE++
Sbjct: 113 NEELK 117


>SB_32642| Best HMM Match : IL10 (HMM E-Value=2.5)
          Length = 544

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 75  LSSEQELIDQA-NTIKDIDNSLRANKKEVIDIPV--KVIVEEIKPSLKSDLENVEVPDE- 242
           LS E E I +  +  +D++  L+  K +  D+ +  K ++EE+K   +++ E +EV +  
Sbjct: 132 LSKELESISKLRDEYEDVNLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEAL 191

Query: 243 NEEIR 257
           NEE++
Sbjct: 192 NEELK 196


>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
          Length = 711

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 75  LSSEQELIDQA-NTIKDIDNSLRANKKEVIDIPV--KVIVEEIKPSLKSDLENVEVPDE- 242
           LS E E I +  +  +D++  L+  K +  D+ +  K ++EE+K   +++ E +EV +  
Sbjct: 132 LSKELESISKLRDEYEDVNLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEAL 191

Query: 243 NEEIR 257
           NEE++
Sbjct: 192 NEELK 196


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 468 QINELQASLQHFQEIFGAQIPKLNETL 548
           QI+ELQA LQ+F +I   +IP     L
Sbjct: 559 QISELQAQLQNFMDICFEKIPSTQRAL 585


>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 75  LSSEQELIDQA-NTIKDIDNSLRANKKEVIDIPV--KVIVEEIKPSLKSDLENVEVPDE- 242
           LS E E I +  +  +D++  L+  K +  D+ +  K ++EE+K   +++ E +EV +  
Sbjct: 627 LSKELESISKLRDEYEDVNLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEAL 686

Query: 243 NEEIR 257
           NEE++
Sbjct: 687 NEELK 691


>SB_2239| Best HMM Match : WXG100 (HMM E-Value=2.8)
          Length = 139

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 75  LSSEQELIDQA-NTIKDIDNSLRANKKEVIDIPV--KVIVEEIKPSLKSDLENVEVPDE- 242
           LS E E I +  +  +D++  L+  K +  D+ +  K ++EE+K   +++ E +EV +  
Sbjct: 53  LSKELESISKLRDEYEDVNLELQEWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEAL 112

Query: 243 NEEIR 257
           NEE++
Sbjct: 113 NEELK 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,741,452
Number of Sequences: 59808
Number of extensions: 372597
Number of successful extensions: 1281
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)