Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30170
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.039
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    25   0.48 
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    25   0.48 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.64 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.64 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   0.64 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.84 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 147 KKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEEI 254
           KKE+ DI  +V VEEI    K  L+N ++ D+N+++
Sbjct: 570 KKEIYDILPEVDVEEILGEAKV-LQNFDIKDKNKKV 604


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = -1

Query: 639 PEFDCFKRSLIWRFPRQKGAADGVSWFNKNVAFHSTLVS-ERRKF 508
           P F+  K    W F    G       F  NV F  TL S   RKF
Sbjct: 35  PSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKF 79


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = -1

Query: 639 PEFDCFKRSLIWRFPRQKGAADGVSWFNKNVAFHSTLVS-ERRKF 508
           P F+  K    W F    G       F  NV F  TL S   RKF
Sbjct: 37  PSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKF 81


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 103 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 8
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 172


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 103 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 8
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 138


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 103 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 8
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 17  WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 48


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 508 SWKCCKLAWSSLICSDDDIFGFFPPPKITV*HFLEALTK 392
           +W   ++A +S + +   + GFFP   I    F+E + +
Sbjct: 155 TWHDLRVALTSELTAASTVLGFFPALNIVADSFIELIRR 193


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +3

Query: 45  EDKPLNVVDNLSSEQELIDQANTIKDIDNSL 137
           E  P+ +++NL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 16/67 (23%), Positives = 25/67 (37%)
 Frame = +2

Query: 263 LVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGNFWGGK 442
           +VD R+P   +         + H+D  K  S   +  N     L Q   E  +      K
Sbjct: 32  IVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDK 91

Query: 443 KTKNVVV 463
           K +N +V
Sbjct: 92  KEENFIV 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,544
Number of Sequences: 438
Number of extensions: 3636
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)