Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30170
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 32 0.29
At2g46180.1 68415.m05742 intracellular protein transport protein... 32 0.29
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.51
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related... 31 0.51
At3g25270.1 68416.m03156 hypothetical protein 30 1.2
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 30 1.5
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 29 2.7
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si... 28 6.2
At2g45560.2 68415.m05666 cytochrome P450 family protein 28 6.2
At2g45560.1 68415.m05665 cytochrome P450 family protein 28 6.2
At2g33610.1 68415.m04119 SWIRM domain-containing protein / DNA-b... 28 6.2
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 27 8.2
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 32.3 bits (70), Expect = 0.29
Identities = 24/84 (28%), Positives = 44/84 (52%)
Frame = +3
Query: 3 RRTRSSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI 182
+RT+ + D+V + P +V L E++++D +K S + +K+V I +
Sbjct: 409 KRTKLNNGDRVYSSSSNPESVPIALDEEEQVMDLPLGVK----SSKQKEKKVATI---IT 461
Query: 183 VEEIKPSLKSDLENVEVPDENEEI 254
+EE + S LEN+ V DE E++
Sbjct: 462 IEEREADSGSRLENLWVLDEEEQV 485
>At2g46180.1 68415.m05742 intracellular protein transport protein
USO1-related similar to Intracellular protein transport
protein USO1 (Swiss-Prot:P25386) [Saccharomyces
cerevisiae]
Length = 725
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 81 SEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI-VEEIKPSLKSDLENVEVPDENEEIR 257
++++ + + +KD+D L ++KKE +I KV+ E I K+ + VE D+N ++R
Sbjct: 493 AKEDAMKLSARLKDVDEQLESSKKEKEEITSKVLHAENIAAEWKNRVSKVE--DDNAKVR 550
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 272 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGNFWGGKKTK 451
L P + Q P+H E+ E +++ +KND R G ++S GN + TK
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLS-GNLPVSEFTK 122
>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 414
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +3
Query: 21 IPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKP 200
+P PE D P D+ E ++AN +IDN +R + D+P E P
Sbjct: 171 VPSGEPETNDVPCEEQDDRDVPCEEQERANI--EIDNGVREKLDQAKDVPCVEQESEDVP 228
Query: 201 SLKSDLENVEVPDENEE 251
++ + ++E+ + +E
Sbjct: 229 CVEQERVSIEIDNGEKE 245
>At3g25270.1 68416.m03156 hypothetical protein
Length = 343
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -1
Query: 633 FDCFKRSLIWR---FPRQKGAADGVSWFNKNVAFHSTLVSERRKFLGNVASW 487
FDCF +WR P Q+ G++ K S+ ++ R+ L N+A W
Sbjct: 71 FDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIW 122
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 48 DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENV 227
DK + D + +EL + N +K +L +E+ K + E K SLKSD+EN+
Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97
Query: 228 EV 233
+
Sbjct: 98 NL 99
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 24 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 203
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 204 LKSDLENVE 230
LK + E ++
Sbjct: 152 LKVEKERID 160
>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase SP:O09159 from
[Mus musculus]
Length = 1047
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 78 SSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDEN 245
S+E+ L Q + I NSL N+ E+I IPV ++ S + L+ +P +N
Sbjct: 486 STEETLPGQKSLILVAYNSLGWNRTEIIRIPVNDAGLSVEDSSGNTLDAQYIPMDN 541
>At2g45560.2 68415.m05666 cytochrome P450 family protein
Length = 322
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 335 LRGVQDSVFRALDAAGARDFLNRLEASDFLIFIRHFNVF*ITLQR 201
+ GVQD+V +DAAG D N FL + F + +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252
>At2g45560.1 68415.m05665 cytochrome P450 family protein
Length = 512
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 335 LRGVQDSVFRALDAAGARDFLNRLEASDFLIFIRHFNVF*ITLQR 201
+ GVQD+V +DAAG D N FL + F + +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252
>At2g33610.1 68415.m04119 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 469
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 81 SEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEEIRG 260
SE+ D + I+ ++ + KE +++ +K I + I K DLE + EE+R
Sbjct: 385 SERAWADAKSLIEKEEHEVEGAIKETVEVEMKKIRDRIVHFEKLDLEMERSRKQLEEVRN 444
Query: 261 L 263
L
Sbjct: 445 L 445
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -3
Query: 169 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSG 23
GMSM + +FA RL SM L + S ++ L G+ SA TL G
Sbjct: 70 GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCG 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,199
Number of Sequences: 28952
Number of extensions: 268930
Number of successful extensions: 1003
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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