Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30169
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   2.0  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   2.0  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    26   6.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   6.0  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   6.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.9  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   7.9  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   7.9  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 638 KSPKKGCSVLFVMTVQSWWLRKVIKLITGKNVRARIYH 525
           K P  G  +LF++     W +K+     G+   A +YH
Sbjct: 686 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYH 723


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 306 YTTALLQHLYQTPLF 350
           YT  LLQHLY TP F
Sbjct: 378 YTNLLLQHLYPTPSF 392


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 288 WKNRHSY-TTALLQHLYQTPL 347
           WK+R S  T +LLQ L+QTPL
Sbjct: 41  WKDRMSVKTNSLLQTLFQTPL 61


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +1

Query: 379  PPMPRKPSELPN---PKGAKGVPPPQRI 453
            PP+P   SE+P+   P GA  VP P  I
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 322 YSTFIKPPSL-ALHHVL*DAPPMPRKPSELPNPKGAKGV 435
           Y+ + +P +  AL H    A P P  PS LP   G +G+
Sbjct: 275 YNPYRRPTAQQALEHHYFSALPKPTHPSLLPRKGGEEGI 313


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 382 PMPRKPSELPNPKGAKGVPPPQR 450
           P P K  E  N    KGVPP +R
Sbjct: 446 PEPSKEREASNTTSRKGVPPSKR 468


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 635 SPKKGCSVLFVMTVQSWWLRKVIKLITGKNVRARI 531
           SP+K  S L +++ +++W  ++I L+ G      I
Sbjct: 353 SPEKPLSDLGLISYRAYWAEQIINLVLGMRTETTI 387


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +1

Query: 379  PPM--PRKPSELPNPKGAKGVPPP 444
            PPM  P  PS  P P G    PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 644 KIKSPKKGCSVLFVMTVQSWWLRKVIKLI 558
           K+ SP+K  S L ++T +S+W  +V K +
Sbjct: 269 KLGSPEKPLSDLGLVTYRSYWKMRVAKAL 297


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 346 SLALHHVL*DAPPMPRKPSEL 408
           S+AL H     PP P  PSEL
Sbjct: 331 SMALEHEYFTTPPYPANPSEL 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,276
Number of Sequences: 5004
Number of extensions: 72491
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)