Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30169
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0306 + 2301575-2302480 30 1.5
03_04_0209 + 18581667-18582155 29 2.7
02_05_0686 - 30900748-30902167,30903442-30904742 29 2.7
01_04_0063 - 15574855-15575143,15575398-15575602,15575746-155759... 29 2.7
12_01_0473 + 3708770-3710026 29 3.5
07_01_1052 - 9234506-9235037,9235148-9235849,9236169-9236313,923... 29 3.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.7
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 29 4.7
03_01_0515 - 3864796-3865425 28 6.2
02_01_0090 - 637141-640263 28 6.2
01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304... 28 6.2
07_03_1107 - 24024387-24024497,24025799-24026410 28 8.2
04_04_0176 - 23329589-23331043 28 8.2
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 28 8.2
>11_01_0306 + 2301575-2302480
Length = 301
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 352 ALHHVL*DAPPMPRKPSELPNPKGAKGVPPPQRIWEMVMNEL 477
+LHH D P+P P+ELP P G+ G PP + M M+ L
Sbjct: 121 SLHHGD-DELPVPLPPAELP-PPGSAGNAPPAPLEAMTMSFL 160
>03_04_0209 + 18581667-18582155
Length = 162
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 379 PPMPRKPSELPNPKGAKGVPPPQRIWE 459
PP+P K E P K P P+ +W+
Sbjct: 117 PPIPAKKIEQPTQKKPSSTPKPRNVWK 143
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
APP P P P P KG PPP
Sbjct: 325 APPPPPPPKAAPPPPPPKGPPPP 347
>01_04_0063 -
15574855-15575143,15575398-15575602,15575746-15575947,
15576038-15576613,15576623-15576786,15576826-15576928,
15577259-15577847,15578056-15578372
Length = 814
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 379 PPMPRKPSELPNPKGAKGVPPPQRIWE 459
PP+P K E P K P P+++W+
Sbjct: 604 PPIPAKKLEQPAQKKPSSAPKPKKVWK 630
>12_01_0473 + 3708770-3710026
Length = 418
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 358 HHVL*DAPPMPRKPSELPNPKGAKGVPPPQRIWEMVMNELDRREDPS 498
HH+L P P++ E P G G +R E + E D R+DPS
Sbjct: 221 HHLL----PPPQQQQESPQDPGGAGAFMRKRYREDLFKEDDDRQDPS 263
>07_01_1052 -
9234506-9235037,9235148-9235849,9236169-9236313,
9236478-9237069
Length = 656
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 379 PPMPRKPSELPNPKGAKGVPPPQRIW 456
PP+P K E P K + P P+++W
Sbjct: 158 PPIPAKKLEQPAQKKTQSAPIPKKVW 183
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 340 PPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPP 444
PP L H VL PP P PS LPN + VPPP
Sbjct: 624 PPPLPNHSVLPPPPPPPPPPS-LPN----RLVPPP 653
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPPQR 450
APP P P P P+ A+ PPP R
Sbjct: 120 APPPPPPPPTQPPPREAQLAPPPPR 144
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 379 PPMPRKPSELPNPKGAKGVPPPQRIW 456
PP+P K E P K P P+++W
Sbjct: 340 PPIPAKKLEQPAQKKPPSAPKPRKVW 365
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPPQRIWEMVMNELD 480
A P P PS P P K PPP W V N D
Sbjct: 97 ASPPPPPPSP-PPPSPVKSSPPPPPAWSPVTNVND 130
>02_01_0090 - 637141-640263
Length = 1040
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 492 PKQRRILPGCAMVDSCSNILTGDQFYNFPQPPTLD 596
P+ +P A++D SN+LTG NF P L+
Sbjct: 545 PRSLANMPALAILDLSSNVLTGGIPENFGSSPALE 579
>01_06_0486 -
29729333-29729356,29729856-29730106,29730364-29730466,
29730571-29730663,29730773-29730905,29731184-29731272,
29731385-29731553,29731930-29732016,29732388-29732506,
29732554-29732706
Length = 406
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 553 VRMLEQESTMAHPGKIRRCLGPHVCQARSLPFPIC 449
V+ L + +A GK+R +GP+ R LP P C
Sbjct: 116 VQSLRNTAPVAEKGKLRSWVGPNGQYYRELPCPSC 150
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
APP + P PK AK PPP
Sbjct: 86 APPTKSTKAPAPAPKAAKATPPP 108
>04_04_0176 - 23329589-23331043
Length = 484
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 316 HYYSTFIKPPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPPQR 450
HY ++ K PS H L +PP P + LP+P AK P P +
Sbjct: 56 HYPTSPPKTPSPG-HSALSPSPPPPPRRGPLPDPT-AKAEPEPPK 98
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 337 KPPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPP 444
+PP H D PP P P + P P VPPP
Sbjct: 118 RPPPPPPPHPPEDPPPHPPHPPDHPPPPPPCRVPPP 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,931,076
Number of Sequences: 37544
Number of extensions: 545362
Number of successful extensions: 1865
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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