Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30169
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 101 7e-22
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 9e-21
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_47130| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18298| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_29237| Best HMM Match : I-set (HMM E-Value=0) 29 3.6
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007) 29 4.8
SB_48239| Best HMM Match : Rho_N (HMM E-Value=0.0007) 29 4.8
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 29 4.8
SB_56054| Best HMM Match : rve (HMM E-Value=0.011) 28 6.3
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 28 6.3
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 28 6.3
SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0) 28 6.3
SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_1097| Best HMM Match : Rho_N (HMM E-Value=0.0007) 28 8.4
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 101 bits (241), Expect = 7e-22
Identities = 44/84 (52%), Positives = 55/84 (65%)
Frame = +3
Query: 3 NPNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEMA 182
NPNGCDI+AT+FVSH+YT Y +Q + + HEIA HSI+H +W NATV W E A
Sbjct: 624 NPNGCDIRATFFVSHEYTQYQLLQALYHERHEIADHSISHRLPIPWWKNATVKQWTDEAA 683
Query: 183 GMRVIIEKFSNITDNSVVGVRAPY 254
GMR I+ KF + V G RAP+
Sbjct: 684 GMREILRKFGGVNAEDVKGFRAPF 707
Score = 51.6 bits (118), Expect = 6e-07
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +2
Query: 254 LRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPT 415
L++GG+N+F + + F Y++++ +NPPLWPYT+ + C + CPT
Sbjct: 708 LQIGGDNEFKALHDNKFTYETSMPTQQNNPPLWPYTLEYASTQEC--VIPPCPT 759
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 97.5 bits (232), Expect = 9e-21
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +3
Query: 3 NPNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEMA 182
NPNGC+++AT+FVSH+YT+Y + + + HEIA H+I+H +W AT DWG E+
Sbjct: 1594 NPNGCNVRATFFVSHEYTDYQLLGTLYHERHEIADHTISHRTPIEWWKKATYQDWGSEIR 1653
Query: 183 GMRVIIEKFSNITDNSVVGVRAPY 254
GMR I+++F + + V G RAP+
Sbjct: 1654 GMRDILKEFGGVNEKDVRGFRAPF 1677
Score = 50.8 bits (116), Expect = 1e-06
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +2
Query: 254 LRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPT 415
L++GG+NQF ++ + +F++DS++ ++PPLWPYT+ + C + CP+
Sbjct: 1678 LQIGGDNQFKVLHDHSFMFDSSMPTWRTDPPLWPYTLDYSSAQDC--VIPPCPS 1729
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 77.4 bits (182), Expect = 1e-14
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = +3
Query: 3 NPNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDW 167
NPNGC I AT+F+SH YTNY ++ H +GHE+A H++TH +W +AT ++W
Sbjct: 86 NPNGCPITATFFISHNYTNYYLAEKLHSEGHELADHTVTHRTPTTYWEDATYEEW 140
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 NQFTMMEEQAFLYD-STITAPLSNPPLWPYTMYFRMPHRC 388
+Q+ + F YD S T NPP++PYT+ +R C
Sbjct: 225 HQYPGLYTNNFTYDLSWPTGRYYNPPMYPYTLDYRSIQDC 264
>SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1096
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 297 RHSYTTALLQHLYQTPLFGLTPC-TLGCPTDATET 398
RH YT AL++HL + GL +LGC T T
Sbjct: 588 RHPYTIALVEHLLEKSAAGLPAVESLGCSTQPAGT 622
>SB_47130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 305 LYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTQRGQKGSPPPN 448
LY P +N P T Y H+C + PTQ Q+G+ PN
Sbjct: 178 LYQQGTLTPNTNVP----TGYLSTEHKCTNRVPKQPTQMYQQGTSTPN 221
>SB_18298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 308 YDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTQRGQKGSPPPNAYGK 460
+DS T PLS+ P PY+ +F P S Q + S P+ K
Sbjct: 66 FDSRFTTPLSSRPTSPYSSHFTSPFNSRPTTPSAMYQFEDEDSGLPSETDK 116
>SB_29237| Best HMM Match : I-set (HMM E-Value=0)
Length = 869
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 424 AKGVPPPQRIWEMVMNELDRREDPSND 504
AKGVPPP+ IW+ N++D +D +++
Sbjct: 430 AKGVPPPKLIWQ--RNQIDVVQDGNHE 454
>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1133
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPPQRI 453
+PP P P +P+PK KG+P P RI
Sbjct: 43 SPPPP--PRRVPSPKLLKGLPRPPRI 66
>SB_48239| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 116
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPPQRI 453
+PP P P +P+PK KG+P P RI
Sbjct: 43 SPPPP--PRRVPSPKLLKGLPRPPRI 66
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 337 KPPSLALHHVL*DAPPMPRK--PSELPNPKGAKGVPPPQRIWEMVMNELDRREDPS 498
+PP++ HVL + P ++ S P G PPP EM + +RE+P+
Sbjct: 404 QPPAMLAKHVLAEVPKQAQEYFNSRGIAPLNPTGPPPPSLAVEMPKFWVTKREEPN 459
>SB_56054| Best HMM Match : rve (HMM E-Value=0.011)
Length = 372
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 412 NPKGAKGVPPPQRIWEMVMNELDRREDPSNDEFYPD 519
NP+GA +PP + W+M ++ D ++D + E P+
Sbjct: 278 NPEGASEIPPELQEWQMWQSK-DEQDDFNEPEEKPE 312
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 337 KPPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPP 444
+PP + HH++ PP P P + P PK G+PPP
Sbjct: 1223 RPPPMG-HHMMNMPPPPPAMPPDGP-PK-FMGLPPP 1255
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 470 FITISH-MRWG-GGTPFAPFGLGNSEGFRGIGG 378
++T++ M G GG P+ P G G +E + +GG
Sbjct: 1638 YLTLTQGMHMGLGGNPYGPAGTGKTESVKALGG 1670
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 397 PSELPNPKGAKGVPPPQRI--WEMVMNELDRREDPSNDEFYPDVPW 528
P+ELP+ + V P E NE E PSN++ + PW
Sbjct: 321 PNELPSNETLSTVAPSNETISTESPSNETISTESPSNEKISTEAPW 366
>SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1736
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 470 FITISH-MRWG-GGTPFAPFGLGNSEGFRGIGG 378
++T++ M G GG P+ P G G +E + +GG
Sbjct: 133 YLTLTQGMHMGLGGNPYGPAGTGKTESVKALGG 165
>SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 971
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPPQRIWEMVMNELD 480
+PP P P +P PK KG+P P RI +E++
Sbjct: 175 SPPPP--PRRVPLPKLVKGLPRPPRITPSNTSEIE 207
>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 227 VVSNVREFFNNNSHTGHFLAPIIDSSVAPKTFI 129
+VS+ E F N TG +P++ SSV P T +
Sbjct: 242 MVSDSAENFRNCQGTGGSTSPLMTSSVGPSTLV 274
>SB_1097| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 211
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPPQRI 453
+PP P P +P PK KG+P P RI
Sbjct: 43 SPPPP--PRRVPLPKLVKGLPRPSRI 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,465,079
Number of Sequences: 59808
Number of extensions: 566005
Number of successful extensions: 1826
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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